Variant report

Variant	rs73485281
Chromosome Location	chr6:49070862-49070863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:49048004..49050431-chr6:49070193..49072035,2	K562	blood:
2	chr6:49068560..49071402-chr6:49178600..49180630,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs16878821	1.00[EUR][1000 genomes]
rs1748801	1.00[EUR][1000 genomes]
rs1924993	1.00[EUR][1000 genomes]
rs57718610	1.00[EUR][1000 genomes]
rs58789029	1.00[EUR][1000 genomes]
rs59273206	1.00[EUR][1000 genomes]
rs59514281	1.00[EUR][1000 genomes]
rs59675093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59931512	1.00[EUR][1000 genomes]
rs60374108	1.00[EUR][1000 genomes]
rs61271016	1.00[EUR][1000 genomes]
rs6902534	1.00[EUR][1000 genomes]
rs6916937	1.00[EUR][1000 genomes]
rs6924438	1.00[EUR][1000 genomes]
rs6931146	1.00[EUR][1000 genomes]
rs73431717	1.00[EUR][1000 genomes]
rs73431726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73431759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73431775	1.00[EUR][1000 genomes]
rs73474745	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73474755	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73474763	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485260	1.00[AMR][1000 genomes]
rs73485270	1.00[AMR][1000 genomes]
rs73485275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485283	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485296	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7739407	1.00[AMR][1000 genomes]
rs7751901	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757776	1.00[AMR][1000 genomes]
rs7764691	1.00[AMR][1000 genomes]
rs7769798	1.00[EUR][1000 genomes]
rs7774729	1.00[EUR][1000 genomes]
rs9463461	1.00[AMR][1000 genomes]
rs9918455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885880	chr6:48975662-49102186	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49040400-49089600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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