Variant report

Variant	rs59514281
Chromosome Location	chr6:48969262-48969263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16878821	1.00[EUR][1000 genomes]
rs56708670	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56992455	1.00[EUR][1000 genomes]
rs57718610	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58789029	1.00[EUR][1000 genomes]
rs59273206	1.00[EUR][1000 genomes]
rs59675093	1.00[EUR][1000 genomes]
rs59931512	1.00[EUR][1000 genomes]
rs60374108	1.00[EUR][1000 genomes]
rs61271016	1.00[EUR][1000 genomes]
rs6901989	1.00[EUR][1000 genomes]
rs6916937	1.00[EUR][1000 genomes]
rs6924438	1.00[EUR][1000 genomes]
rs6931146	1.00[EUR][1000 genomes]
rs73431717	1.00[EUR][1000 genomes]
rs73431726	1.00[EUR][1000 genomes]
rs73431759	1.00[EUR][1000 genomes]
rs73431775	1.00[EUR][1000 genomes]
rs73474745	1.00[EUR][1000 genomes]
rs73474755	1.00[EUR][1000 genomes]
rs73474763	1.00[EUR][1000 genomes]
rs73485275	1.00[EUR][1000 genomes]
rs73485281	1.00[EUR][1000 genomes]
rs73485283	1.00[EUR][1000 genomes]
rs73485296	1.00[EUR][1000 genomes]
rs7751901	1.00[EUR][1000 genomes]
rs7769798	1.00[EUR][1000 genomes]
rs7774729	1.00[EUR][1000 genomes]
rs9918455	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603037	chr6:48804862-48995221	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48967800-48971400	Enhancers	Fetal Brain Male	brain
2	chr6:48968000-48971000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:48968600-48970000	Enhancers	Adipose Nuclei	Adipose
4	chr6:48968800-48969400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:48968800-48969800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:48968800-48970000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:48969000-48969800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:48969000-48970400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:48969200-48969800	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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