Variant report

Variant	rs6901989
Chromosome Location	chr6:48807215-48807216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56708670	1.00[EUR][1000 genomes]
rs56992455	1.00[EUR][1000 genomes]
rs57718610	1.00[EUR][1000 genomes]
rs58789029	1.00[EUR][1000 genomes]
rs59273206	1.00[EUR][1000 genomes]
rs59514281	1.00[EUR][1000 genomes]
rs60374108	1.00[EUR][1000 genomes]
rs6916937	1.00[EUR][1000 genomes]
rs7743806	1.00[AMR][1000 genomes]
rs7769798	1.00[EUR][1000 genomes]
rs7775381	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603037	chr6:48804862-48995221	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48803800-48807400	Weak transcription	HMEC	breast
2	chr6:48804000-48807800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:48806600-48807400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:48806800-48807400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:48806800-48807600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:48807000-48807400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:48807000-48807600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:48807000-48813800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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