Variant report
| Variant | rs56992455 |
|---|---|
| Chromosome Location | chr6:48873898-48873899 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs56708670 | 1.00[EUR][1000 genomes] |
| rs57718610 | 1.00[EUR][1000 genomes] |
| rs58183536 | 1.00[AMR][1000 genomes] |
| rs58789029 | 1.00[EUR][1000 genomes] |
| rs59273206 | 1.00[EUR][1000 genomes] |
| rs59514281 | 1.00[EUR][1000 genomes] |
| rs60374108 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6458634 | 1.00[AMR][1000 genomes] |
| rs6901989 | 1.00[EUR][1000 genomes] |
| rs6910191 | 1.00[AMR][1000 genomes] |
| rs6916937 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6920729 | 1.00[AMR][1000 genomes] |
| rs6922776 | 1.00[AMR][1000 genomes] |
| rs6934286 | 1.00[AMR][1000 genomes] |
| rs6934722 | 1.00[AMR][1000 genomes] |
| rs7744481 | 1.00[AMR][1000 genomes] |
| rs7756599 | 1.00[AMR][1000 genomes] |
| rs7759162 | 1.00[AMR][1000 genomes] |
| rs7763522 | 1.00[AMR][1000 genomes] |
| rs7767906 | 1.00[AMR][1000 genomes] |
| rs7769798 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9689236 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949690 | chr6:48595821-49289855 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv603037 | chr6:48804862-48995221 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv5292 | chr6:48837853-48884078 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:48832200-48944000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
