Variant report
| Variant | rs6924438 |
|---|---|
| Chromosome Location | chr6:49089445-49089446 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs16878821 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1748801 | 1.00[EUR][1000 genomes] |
| rs1924993 | 1.00[EUR][1000 genomes] |
| rs57718610 | 1.00[EUR][1000 genomes] |
| rs57963802 | 1.00[AMR][1000 genomes] |
| rs58789029 | 1.00[EUR][1000 genomes] |
| rs59273206 | 1.00[EUR][1000 genomes] |
| rs59514281 | 1.00[EUR][1000 genomes] |
| rs59675093 | 1.00[EUR][1000 genomes] |
| rs59931512 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60374108 | 1.00[EUR][1000 genomes] |
| rs61271016 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6902534 | 1.00[EUR][1000 genomes] |
| rs6916937 | 1.00[EUR][1000 genomes] |
| rs6931146 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73431717 | 1.00[EUR][1000 genomes] |
| rs73431726 | 1.00[EUR][1000 genomes] |
| rs73431759 | 1.00[EUR][1000 genomes] |
| rs73431775 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73474745 | 1.00[EUR][1000 genomes] |
| rs73474755 | 1.00[EUR][1000 genomes] |
| rs73474763 | 1.00[EUR][1000 genomes] |
| rs73485275 | 1.00[EUR][1000 genomes] |
| rs73485281 | 1.00[EUR][1000 genomes] |
| rs73485283 | 1.00[EUR][1000 genomes] |
| rs73485296 | 1.00[EUR][1000 genomes] |
| rs7751901 | 1.00[EUR][1000 genomes] |
| rs7769798 | 1.00[EUR][1000 genomes] |
| rs7774729 | 1.00[EUR][1000 genomes] |
| rs9918455 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949690 | chr6:48595821-49289855 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv603049 | chr6:48931959-49169337 | Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv885880 | chr6:48975662-49102186 | Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv2755862 | chr6:49081541-49298041 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49040400-49089600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr6:49089400-49089600 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 3 | chr6:49089400-49090600 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
