Variant report

Variant	rs7766813
Chromosome Location	chr6:13547300-13547301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2115062	1.00[EUR][1000 genomes]
rs2195307	1.00[EUR][1000 genomes]
rs73725828	1.00[EUR][1000 genomes]
rs73725829	1.00[EUR][1000 genomes]
rs73725830	1.00[EUR][1000 genomes]
rs7763818	1.00[EUR][1000 genomes]
rs9474154	1.00[EUR][1000 genomes]
rs9474175	1.00[EUR][1000 genomes]
rs9474177	1.00[EUR][1000 genomes]
rs9474197	1.00[EUR][1000 genomes]
rs9474308	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13544800-13555200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:13545200-13548800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:13545200-13555000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:13545400-13548800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:13545400-13548800	Weak transcription	HepG2	liver
6	chr6:13545400-13549200	Weak transcription	Liver	Liver
7	chr6:13545800-13547600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:13547000-13548800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:13547200-13554600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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