Variant report

Variant	rs7770092
Chromosome Location	chr6:30028871-30028872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:507)
CpG islands
(count:61)
Chromatin interactive
region (count:14)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:507 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:30028714-30029215	MCF-7	breast:	n/a	n/a
2	NFYA	chr6:30028576-30029359	Hela-S3	cervix:	n/a	n/a
3	MAX	chr6:30028324-30030090	MCF-7	breast:	n/a	n/a
4	TEAD4	chr6:30028437-30029462	HepG2	liver:	n/a	n/a
5	EP300	chr6:30028810-30029342	HepG2	liver:	n/a	n/a
6	POLR2A	chr6:30028331-30029541	Raji	blood:	n/a	n/a
7	POLR2A	chr6:30028318-30029641	K562	blood:	n/a	n/a
8	TBL1XR1	chr6:30028484-30029474	K562	blood:	n/a	n/a
9	CEBPB	chr6:30028369-30029283	GM12878	blood:	n/a	n/a
10	MYC	chr6:30028358-30029428	K562	blood:	n/a	n/a
11	POLR2A	chr6:30028263-30029302	H1-hESC	embryonic stem cell:	n/a	n/a
12	BCL3	chr6:30028664-30029241	A549	lung:	n/a	n/a
13	NFIC	chr6:30028650-30029421	HepG2	liver:	n/a	n/a
14	MAX	chr6:30028442-30029648	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr6:30028676-30029824	GM12878	blood:	n/a	n/a
16	PML	chr6:30028399-30029917	GM12878	blood:	n/a	n/a
17	POLR2A	chr6:30028517-30029324	HCT-116	colon:	n/a	n/a
18	REST	chr6:30028721-30029050	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr6:30028555-30029405	U87	brain:	n/a	n/a
20	CREB1	chr6:30028646-30029296	ECC-1	luminal epithelium:	n/a	n/a
21	POLR2A	chr6:30028203-30030091	HepG2	liver:	n/a	n/a
22	RELA	chr6:30028625-30029253	GM18951	blood:	n/a	n/a
23	SRF	chr6:30028541-30029452	HCT-116	colon:	n/a	n/a
24	NFATC1	chr6:30028717-30029284	GM12878	blood:	n/a	n/a
25	POLR2A	chr6:30028288-30029795	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr6:30028658-30029465	A549	lung:	n/a	n/a
27	MYC	chr6:30028407-30029470	MCF10A-Er-Src	breast:	n/a	n/a
28	TAF1	chr6:30028642-30029790	PFSK-1	brain:	n/a	n/a
29	TCF7L2	chr6:30028784-30029632	Hela-S3	cervix:	n/a	n/a
30	BHLHE40	chr6:30028769-30029459	HepG2	liver:	n/a	n/a
31	JUN	chr6:30028834-30029165	H1-hESC	embryonic stem cell:	n/a	chr6:30028962-30028975
32	SIX5	chr6:30028809-30029234	K562	blood:	n/a	n/a
33	MAFK	chr6:30028377-30030142	K562	blood:	n/a	n/a
34	MXI1	chr6:30028823-30029127	K562	blood:	n/a	n/a
35	CEBPB	chr6:30028796-30029193	HepG2	liver:	n/a	n/a
36	POLR2A	chr6:30028627-30029426	SK-N-MC	brain:	n/a	n/a
37	EBF1	chr6:30028297-30029257	GM12878	blood:	n/a	chr6:30028684-30028695
38	ELK1	chr6:30028699-30029240	GM12878	blood:	n/a	n/a
39	REST	chr6:30028655-30029427	HepG2	liver:	n/a	n/a
40	SIN3AK20	chr6:30028818-30029237	PFSK-1	brain:	n/a	n/a
41	POLR2A	chr6:30028273-30029658	H1-neurons	neurons:	n/a	n/a
42	REST	chr6:30028752-30029170	SK-N-SH	brain:	n/a	n/a
43	POU2F2	chr6:30028758-30029204	GM12878	blood:	n/a	n/a
44	ELF1	chr6:30028795-30029204	K562	blood:	n/a	n/a
45	POLR2A	chr6:30028796-30029211	A549	lung:	n/a	n/a
46	TCF12	chr6:30028837-30029186	H1-hESC	embryonic stem cell:	n/a	n/a
47	SRF	chr6:30028816-30029091	GM12878	blood:	n/a	n/a
48	EGR1	chr6:30028777-30029239	K562	blood:	n/a	n/a
49	FOS	chr6:30028868-30029214	MCF10A-Er-Src	breast:	n/a	n/a
50	MBD4	chr6:30028291-30030076	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30028841-30028891	ovcar-3	ovarian:	n/a
2	chr6:30028841-30028891	PANC-1	pancreas:	n/a
3	chr6:30028841-30028891	SAEC	small airway:	n/a
4	chr6:30028841-30028891	PFSK-1	brain:	n/a
5	chr6:30028841-30028891	K562	blood:	n/a
6	chr6:30028841-30028891	MCF-7	breast:	n/a
7	chr6:30028841-30028891	HPAEpiC	pulmonary alveolar:	n/a
8	chr6:30028841-30028891	GM12891	blood:	n/a
9	chr6:30028841-30028891	A549	lung:	n/a
10	chr6:30028841-30028891	AoSMC	blood vessel:	n/a
11	chr6:30028841-30028891	PrEC	prostate:	n/a
12	chr6:30028841-30028891	AG09319	gingival:	n/a
13	chr6:30028841-30028891	HIPEpiC	eye:	n/a
14	chr6:30028841-30028891	GM19239	blood:	n/a
15	chr6:30028841-30028891	Jurkat	blood:	n/a
16	chr6:30028841-30028891	NT2-D1	testis:	n/a
17	chr6:30028841-30028891	HEEpiC	esophagus:	n/a
18	chr6:30028841-30028891	HNPCEpiC	eye:	n/a
19	chr6:30028841-30028891	SK-N-MC	brain:	n/a
20	chr6:30028841-30028891	BJ	skin:	n/a
21	chr6:30028841-30028891	HEK293	kidney:	embryo
22	chr6:30028841-30028891	CMK	blood:	n/a
23	chr6:30028841-30028891	NH-A	brain:	n/a
24	chr6:30028841-30028891	SKMC	muscle:	n/a
25	chr6:30028841-30028891	HRPEpiC	eye:	n/a
26	chr6:30028841-30028891	BE2_C	brain:	n/a
27	chr6:30028841-30028891	IMR90	lung:	fetal
28	chr6:30028841-30028891	GM06990	blood:	n/a
29	chr6:30028841-30028891	AG04450	lung:	fetal
30	chr6:30028841-30028891	MCF10A-Er-Src	breast:	n/a
31	chr6:30028841-30028891	HepG2	liver:	n/a
32	chr6:30028841-30028891	HL-60	blood:	n/a
33	chr6:30028841-30028891	SK-N-SH	brain:	n/a
34	chr6:30028841-30028891	U87	brain:	n/a
35	chr6:30028841-30028891	HUVEC	blood vessel:	n/a
36	chr6:30028841-30028891	HCPEpiC	choroid plexus:	n/a
37	chr6:30028841-30028891	HAEpiC	amniotic membrane:	n/a
38	chr6:30028841-30028891	H1-hESC	embryonic stem cell:	embryo
39	chr6:30028841-30028891	AG09309	skin:	n/a
40	chr6:30028841-30028891	HCF	heart:	n/a
41	chr6:30028841-30028891	HCT-116	colon:	n/a
42	chr6:30028841-30028891	AG04449	skin:	fetal
43	chr6:30028841-30028891	HRE	kidney:	n/a
44	chr6:30028841-30028891	HMEC	breast:	n/a
45	chr6:30028841-30028891	HCM	heart:	n/a
46	chr6:30028841-30028891	SK-N-SH_RA	brain:	n/a
47	chr6:30028841-30028891	ECC-1	luminal epithelium:	n/a
48	chr6:30028841-30028891	GM12878	blood:	n/a
49	chr6:30028841-30028891	NB4	blood:	n/a
50	chr6:30028841-30028891	NHDF-neo	bronchial:	n/a

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:43010950..43011698-chr6:30028431..30028958,2	HCT-116	colon:
2	chr6:30028084..30030840-chr6:30103303..30105686,3	MCF-7	breast:
3	chr19:39897352..39897996-chr6:30028513..30029383,2	Hela-S3	cervix:
4	chr17:34136416..34136960-chr6:30028632..30029577,2	Hela-S3	cervix:
5	chr6:30028230..30030474-chr6:30075345..30077234,2	MCF-7	breast:
6	chr6:30027015..30030813-chr6:30040823..30045193,4	K562	blood:
7	chr1:198126044..198126586-chr6:30028621..30029511,2	Hela-S3	cervix:
8	chr17:59475970..59478357-chr6:30028344..30030119,2	MCF-7	breast:
9	chr6:30028283..30029937-chr6:30312414..30314218,2	K562	blood:
10	chr6:30002424..30006428-chr6:30027567..30030890,5	MCF-7	breast:
11	chr3:170588048..170588784-chr6:30028495..30029091,2	Hela-S3	cervix:
12	chr3:53879945..53880611-chr6:30028486..30029019,2	Hela-S3	cervix:
13	chr6:30028283..30030226-chr6:30312404..30313914,2	K562	blood:
14	chr6:30027269..30029063-chr6:30293187..30296080,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNF39-4	chr6:30028518-30028966	ENSG00000204623
2	lnc-RNF39-4	chr6:30028518-30029417	ENSG00000204623
3	lnc-RNF39-4	chr6:30028518-30028971	NONHSAT108588
4	lnc-RNF39-4	chr6:30028518-30028943	NONHSAT108590
5	lnc-RNF39-4	chr6:30028518-30028971	NONHSAT108591

No data

Variant related genes	Relation type
ZNRD1-AS1	TF binding region
ZNRD1	TF binding region
ZNRD1	CpG island
ZNRD1-AS1	CpG island
ENSG00000241370	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000270604	Chromatin interaction
ENSG00000204623	Chromatin interaction
ENSG00000100227	Chromatin interaction
ENSG00000231074	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000204616	Chromatin interaction
ENSG00000270022	Chromatin interaction
ENSG00000204614	Chromatin interaction
ENSG00000128016	Chromatin interaction
ENSG00000056736	Chromatin interaction
ENSG00000163584	Chromatin interaction
ENSG00000016391	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000151414	Chromatin interaction
ENSG00000204618	Chromatin interaction
ENSG00000172660	Chromatin interaction
ENSG00000267131	Chromatin interaction

Extended variants
information (count: 173 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs1048412	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17187210	0.94[AFR][1000 genomes]
rs2074479	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2074480	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2074481	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2074482	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2286405	0.96[AFR][1000 genomes]
rs2301753	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2301754	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2394256	0.96[AFR][1000 genomes]
rs2394257	0.88[AFR][1000 genomes]
rs3734835	0.96[AFR][1000 genomes]
rs3757327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757331	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765604	0.96[AFR][1000 genomes]
rs3765606	0.96[AFR][1000 genomes]
rs3869067	0.96[AFR][1000 genomes]
rs3869068	0.96[AFR][1000 genomes]
rs3893530	0.95[AFR][1000 genomes]
rs4448133	0.96[AFR][1000 genomes]
rs6457139	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457140	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457141	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6902691	0.93[AFR][1000 genomes]
rs6905157	0.96[AFR][1000 genomes]
rs6910507	0.92[AFR][1000 genomes]
rs6910517	0.94[AFR][1000 genomes]
rs6910898	0.94[AFR][1000 genomes]
rs6911279	0.94[AFR][1000 genomes]
rs6911467	0.96[AFR][1000 genomes]
rs6911634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911737	0.94[AFR][1000 genomes]
rs6912080	0.94[AFR][1000 genomes]
rs6912154	0.93[AFR][1000 genomes]
rs6912877	0.87[AFR][1000 genomes]
rs6917477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917603	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6919617	0.96[AFR][1000 genomes]
rs6922640	0.94[AFR][1000 genomes]
rs6926792	0.96[AFR][1000 genomes]
rs6930993	0.94[AFR][1000 genomes]
rs6931776	0.96[AFR][1000 genomes]
rs6941318	0.94[AFR][1000 genomes]
rs7738475	0.96[AFR][1000 genomes]
rs7742417	0.96[AFR][1000 genomes]
rs7742871	0.94[AFR][1000 genomes]
rs7746866	0.96[AFR][1000 genomes]
rs7750514	0.93[AFR][1000 genomes]
rs7751116	0.96[AFR][1000 genomes]
rs7758512	0.96[AFR][1000 genomes]
rs7760299	0.96[AFR][1000 genomes]
rs7761314	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7768179	0.85[AFR][1000 genomes]
rs7769930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770811	0.80[AFR][1000 genomes]
rs886997	0.83[AFR][1000 genomes]
rs9260951	0.92[AFR][1000 genomes]
rs9260959	0.87[AFR][1000 genomes]
rs9260960	0.94[AFR][1000 genomes]
rs9260961	0.94[AFR][1000 genomes]
rs9260963	0.94[AFR][1000 genomes]
rs9260964	0.94[AFR][1000 genomes]
rs9260965	0.94[AFR][1000 genomes]
rs9260966	0.94[AFR][1000 genomes]
rs9260967	0.94[AFR][1000 genomes]
rs9260968	0.94[AFR][1000 genomes]
rs9260970	0.94[AFR][1000 genomes]
rs9260971	0.94[AFR][1000 genomes]
rs9260972	0.94[AFR][1000 genomes]
rs9260974	0.94[AFR][1000 genomes]
rs9260975	0.94[AFR][1000 genomes]
rs9260977	0.94[AFR][1000 genomes]
rs9260978	0.94[AFR][1000 genomes]
rs9260979	0.94[AFR][1000 genomes]
rs9260980	0.93[AFR][1000 genomes]
rs9260982	0.94[AFR][1000 genomes]
rs9260987	0.91[AFR][1000 genomes]
rs9260990	0.92[AFR][1000 genomes]
rs9260994	0.89[AFR][1000 genomes]
rs9260995	0.94[AFR][1000 genomes]
rs9260996	0.94[AFR][1000 genomes]
rs9260999	0.94[AFR][1000 genomes]
rs9261000	0.94[AFR][1000 genomes]
rs9261001	0.93[AFR][1000 genomes]
rs9261003	0.93[AFR][1000 genomes]
rs9261004	0.94[AFR][1000 genomes]
rs9261008	0.91[AFR][1000 genomes]
rs9261009	0.93[AFR][1000 genomes]
rs9261010	0.94[AFR][1000 genomes]
rs9261012	0.90[AFR][1000 genomes]
rs9261013	0.94[AFR][1000 genomes]
rs9261015	0.94[AFR][1000 genomes]
rs9261016	0.94[AFR][1000 genomes]
rs9261020	0.93[AFR][1000 genomes]
rs9261022	0.93[AFR][1000 genomes]
rs9261023	0.93[AFR][1000 genomes]
rs9261024	0.93[AFR][1000 genomes]
rs9261026	0.93[AFR][1000 genomes]
rs9261031	0.94[AFR][1000 genomes]
rs9261033	0.94[AFR][1000 genomes]
rs9261049	0.94[AFR][1000 genomes]
rs9261060	0.92[AFR][1000 genomes]
rs9261074	0.93[AFR][1000 genomes]
rs9261103	0.95[AFR][1000 genomes]
rs9261105	0.96[AFR][1000 genomes]
rs9261110	0.96[AFR][1000 genomes]
rs9261111	0.96[AFR][1000 genomes]
rs9261113	0.95[AFR][1000 genomes]
rs9261115	0.96[AFR][1000 genomes]
rs9261116	0.96[AFR][1000 genomes]
rs9261128	0.96[AFR][1000 genomes]
rs9261129	0.96[AFR][1000 genomes]
rs9261137	0.96[AFR][1000 genomes]
rs9261145	0.96[AFR][1000 genomes]
rs9261149	0.94[AFR][1000 genomes]
rs9261150	0.96[AFR][1000 genomes]
rs9261154	0.95[AFR][1000 genomes]
rs9261162	0.91[AFR][1000 genomes]
rs9261163	0.96[AFR][1000 genomes]
rs9261170	0.96[AFR][1000 genomes]
rs9261174	0.96[AFR][1000 genomes]
rs9261180	0.96[AFR][1000 genomes]
rs9261183	0.94[AFR][1000 genomes]
rs9261185	0.94[AFR][1000 genomes]
rs9261186	0.96[AFR][1000 genomes]
rs9261187	0.96[AFR][1000 genomes]
rs9261188	0.95[AFR][1000 genomes]
rs9261189	0.96[AFR][1000 genomes]
rs9261195	0.96[AFR][1000 genomes]
rs9261198	0.93[AFR][1000 genomes]
rs9261199	0.96[AFR][1000 genomes]
rs9261200	0.96[AFR][1000 genomes]
rs9261201	0.96[AFR][1000 genomes]
rs9261204	0.96[AFR][1000 genomes]
rs9261205	0.96[AFR][1000 genomes]
rs9261206	0.96[AFR][1000 genomes]
rs9261209	0.96[AFR][1000 genomes]
rs9261210	0.96[AFR][1000 genomes]
rs9261216	0.96[AFR][1000 genomes]
rs9261217	0.96[AFR][1000 genomes]
rs9261221	0.96[AFR][1000 genomes]
rs9261222	0.94[AFR][1000 genomes]
rs9261224	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261227	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261243	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261254	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261256	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261274	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261291	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9261292	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9261294	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9261295	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9261297	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9261298	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9261299	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9261300	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9261302	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031115	chr6:29934199-30058223	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv538172	chr6:29934199-30058223	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7770092	ZNRD1	cis	lymphoblastoid	seeQTL
rs7770092	C6orf12	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30027600-30030200	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr6:30027600-30031000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:30027800-30029400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:30027800-30029600	Active TSS	Right Atrium	heart
5	chr6:30027800-30029800	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:30027800-30029800	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:30027800-30029800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:30027800-30029800	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr6:30027800-30030000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:30027800-30030000	Active TSS	Aorta	Aorta
11	chr6:30027800-30030200	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:30027800-30030200	Active TSS	Esophagus	oesophagus
13	chr6:30028000-30029600	Active TSS	Brain Anterior Caudate	brain
14	chr6:30028000-30029800	Active TSS	H1 Cell Line	embryonic stem cell
15	chr6:30028000-30029800	Active TSS	Fetal Kidney	kidney
16	chr6:30028000-30029800	Active TSS	Fetal Muscle Trunk	muscle
17	chr6:30028000-30029800	Active TSS	Right Ventricle	heart
18	chr6:30028000-30030000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:30028000-30030000	Active TSS	Ovary	ovary
20	chr6:30028000-30030000	Active TSS	A549	lung
21	chr6:30028000-30030000	Bivalent/Poised TSS	HepG2	liver
22	chr6:30028000-30030200	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr6:30028000-30030200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:30028000-30030200	Active TSS	Psoas Muscle	Psoas
25	chr6:30028200-30029400	Active TSS	Colonic Mucosa	Colon
26	chr6:30028200-30029600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:30028200-30029600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:30028200-30029600	Active TSS	Brain Angular Gyrus	brain
29	chr6:30028200-30029600	Active TSS	Brain Hippocampus Middle	brain
30	chr6:30028200-30029600	ZNF genes & repeats	Fetal Brain Male	brain
31	chr6:30028200-30029600	Active TSS	Placenta Amnion	Placenta Amnion
32	chr6:30028200-30029800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:30028200-30029800	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr6:30028200-30029800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:30028200-30029800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:30028200-30029800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:30028200-30029800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:30028200-30029800	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr6:30028200-30029800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:30028200-30029800	Active TSS	Muscle Satellite Cultured Cells	--
41	chr6:30028200-30029800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:30028200-30029800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:30028200-30029800	Active TSS	Left Ventricle	heart
44	chr6:30028200-30029800	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr6:30028200-30029800	Active TSS	HMEC	breast
46	chr6:30028200-30029800	Active TSS	NHDF-Ad	bronchial
47	chr6:30028200-30029800	Active TSS	NHEK	skin
48	chr6:30028200-30030000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr6:30028200-30030000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr6:30028200-30030000	Active TSS	Fetal Intestine Small	intestine

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