Variant report

Variant	rs7770322
Chromosome Location	chr6:133867218-133867219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17062564	1.00[EUR][1000 genomes]
rs3777859	1.00[EUR][1000 genomes]
rs6915920	1.00[EUR][1000 genomes]
rs6917488	1.00[EUR][1000 genomes]
rs6936392	1.00[EUR][1000 genomes]
rs73544908	1.00[EUR][1000 genomes]
rs73561754	1.00[EUR][1000 genomes]
rs73561755	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886681	chr6:133833284-133869617	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133823200-133869600	Weak transcription	Psoas Muscle	Psoas
2	chr6:133861600-133872400	Weak transcription	HSMM	muscle
3	chr6:133862800-133869200	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:133863200-133868400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:133863200-133868400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:133863800-133869200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:133864000-133867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:133864000-133869200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:133864000-133869400	Weak transcription	A549	lung
10	chr6:133864000-133869400	Weak transcription	NH-A	brain
11	chr6:133864000-133869600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:133864200-133870600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:133864600-133869600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:133865600-133870800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:133866000-133870400	Weak transcription	Gastric	stomach
16	chr6:133866000-133872800	Weak transcription	Aorta	Aorta
17	chr6:133866200-133867600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:133866200-133867600	Enhancers	Osteobl	bone
19	chr6:133866800-133868200	Enhancers	Fetal Brain Male	brain
20	chr6:133867000-133867400	Enhancers	NHDF-Ad	bronchial
21	chr6:133867000-133867600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:133867000-133867600	Enhancers	Fetal Lung	lung
23	chr6:133867000-133867600	Enhancers	Fetal Muscle Leg	muscle
24	chr6:133867000-133867600	Enhancers	HSMMtube	muscle
25	chr6:133867000-133867800	Enhancers	Fetal Brain Female	brain
26	chr6:133867000-133867800	Enhancers	NHLF	lung
27	chr6:133867000-133868000	Enhancers	Fetal Stomach	stomach
28	chr6:133867000-133869000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:133867200-133867400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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