Variant report

Variant	rs17062564
Chromosome Location	chr6:133770877-133770878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11961662	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11962647	0.91[ASN][1000 genomes]
rs11963218	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11963948	0.95[ASN][1000 genomes]
rs11965224	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11966493	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11967280	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11969822	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3777817	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3777820	0.84[ASN][1000 genomes]
rs3777832	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3777833	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3777835	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3777837	0.91[ASN][1000 genomes]
rs3777839	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3777840	0.95[ASN][1000 genomes]
rs3777842	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3777846	0.95[ASN][1000 genomes]
rs3777859	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3822931	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3822932	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3822933	0.91[ASN][1000 genomes]
rs5022972	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs58450371	0.95[ASN][1000 genomes]
rs6912802	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6915920	1.00[EUR][1000 genomes]
rs6917488	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934520	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6936392	1.00[EUR][1000 genomes]
rs6940775	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6941577	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs73544908	1.00[EUR][1000 genomes]
rs73544941	0.95[ASN][1000 genomes]
rs73561742	0.95[ASN][1000 genomes]
rs73561754	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73561755	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73561756	0.95[ASN][1000 genomes]
rs73561759	0.95[ASN][1000 genomes]
rs7770322	1.00[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133749800-133777600	Weak transcription	Hela-S3	cervix
2	chr6:133756800-133772600	Weak transcription	Right Atrium	heart
3	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
4	chr6:133769400-133777600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:133769600-133774600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links