Variant report

Variant	rs3777817
Chromosome Location	chr6:133718486-133718487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133717111..133719762-chr6:133722071..133724079,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11961662	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11962647	0.93[ASN][1000 genomes]
rs11963218	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11963948	0.89[ASN][1000 genomes]
rs11965224	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11966493	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11967280	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11968392	0.91[YRI][hapmap]
rs11969822	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17062564	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3777820	1.00[ASN][1000 genomes]
rs3777832	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3777833	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3777835	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3777837	0.93[ASN][1000 genomes]
rs3777839	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3777840	0.89[ASN][1000 genomes]
rs3777842	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3777846	0.89[ASN][1000 genomes]
rs3777859	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3822931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3822932	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3822933	0.93[ASN][1000 genomes]
rs5022972	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs58450371	0.89[ASN][1000 genomes]
rs6912802	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6934520	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6940775	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6941577	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs73544941	0.89[ASN][1000 genomes]
rs73561742	0.89[ASN][1000 genomes]
rs73561754	0.89[ASN][1000 genomes]
rs73561755	0.89[ASN][1000 genomes]
rs73561756	0.89[ASN][1000 genomes]
rs73561759	0.89[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133709800-133719800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:133713800-133719200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:133715000-133719400	Weak transcription	Hela-S3	cervix
4	chr6:133716000-133728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:133716800-133718600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:133717000-133718600	Enhancers	HSMMtube	muscle
7	chr6:133717600-133718600	Enhancers	Fetal Muscle Leg	muscle
8	chr6:133718000-133720600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:133718000-133725000	Weak transcription	A549	lung
10	chr6:133718200-133728600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:133718400-133718600	Enhancers	Psoas Muscle	Psoas
12	chr6:133718400-133719800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:133718400-133725800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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