Variant report

Variant	rs11961662
Chromosome Location	chr6:133765854-133765855
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11963218	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11965224	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11966493	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11967280	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11969822	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12661876	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12663756	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12664324	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12665147	1.00[EUR][1000 genomes]
rs12665159	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665690	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062561	1.00[EUR][1000 genomes]
rs17062564	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2076255	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2076256	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28360637	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3756873	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3777817	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3777832	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777833	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777835	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777839	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777842	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777853	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777859	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777860	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798355	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3822931	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3822932	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs41286198	0.88[EUR][1000 genomes]
rs4895966	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895967	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5022972	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55963818	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56088418	0.85[EUR][1000 genomes]
rs56140782	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56182562	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56241016	0.85[EUR][1000 genomes]
rs6912802	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6922694	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6933900	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6934520	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6940775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6941577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73544919	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73544934	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544945	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133749800-133777600	Weak transcription	Hela-S3	cervix
2	chr6:133756800-133772600	Weak transcription	Right Atrium	heart
3	chr6:133758400-133769000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas

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