Variant report

Variant	rs12665159
Chromosome Location	chr6:133757791-133757792
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11961662	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661876	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12663756	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12664324	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12665147	0.97[EUR][1000 genomes]
rs12665690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062561	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2076255	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2076256	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28360637	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3756873	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3777853	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3777860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777863	1.00[CEU][hapmap]
rs3798355	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41286198	0.86[EUR][1000 genomes]
rs4895966	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895967	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55963818	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56088418	0.83[EUR][1000 genomes]
rs56140782	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56182562	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56241016	0.83[EUR][1000 genomes]
rs6922694	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6933900	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544919	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73544934	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544945	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133732600-133758200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133749800-133777600	Weak transcription	Hela-S3	cervix
3	chr6:133752400-133763400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:133753800-133757800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:133753800-133757800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:133753800-133758000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:133756800-133772600	Weak transcription	Right Atrium	heart
8	chr6:133757200-133760600	Weak transcription	Psoas Muscle	Psoas
9	chr6:133757400-133758400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:133757600-133757800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:133757600-133757800	Enhancers	HSMMtube	muscle

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