Variant report

Variant	rs56182562
Chromosome Location	chr6:133780389-133780390
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11961662	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12661876	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12663756	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12664324	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12665147	0.97[EUR][1000 genomes]
rs12665159	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12665690	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17062561	0.97[EUR][1000 genomes]
rs2076255	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2076256	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28360637	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3756873	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777853	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3777860	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3798355	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41286198	0.86[EUR][1000 genomes]
rs4895966	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4895967	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55963818	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56088418	0.83[EUR][1000 genomes]
rs56140782	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56241016	0.83[EUR][1000 genomes]
rs6922694	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933900	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73544919	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73544934	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73544945	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133774800-133780600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:133777800-133785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:133778000-133783400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:133778400-133783400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:133778400-133789000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:133779600-133783400	Weak transcription	Hela-S3	cervix
8	chr6:133779800-133781200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:133780000-133781000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links