Variant report

Variant	rs6933900
Chromosome Location	chr6:133752547-133752548
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11961662	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12661876	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12663756	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12664324	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12665147	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12665159	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12665690	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17062561	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2076255	1.00[CEU][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2076256	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28360637	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3756873	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3777853	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3777860	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777863	1.00[CEU][hapmap]
rs3798355	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41286198	0.86[EUR][1000 genomes]
rs4895966	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895967	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55963818	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56088418	0.83[EUR][1000 genomes]
rs56140782	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56182562	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56241016	0.83[EUR][1000 genomes]
rs6922694	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73544919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73544934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525971	chr6:133726646-133753825	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133732600-133758200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133746000-133753200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:133749800-133777600	Weak transcription	Hela-S3	cervix
4	chr6:133752000-133752600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:133752000-133753800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:133752000-133753800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:133752000-133754000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:133752200-133752800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:133752200-133752800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:133752200-133753600	Enhancers	Right Atrium	heart
11	chr6:133752200-133753800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:133752200-133754000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:133752200-133754200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:133752200-133754200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:133752400-133752800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr6:133752400-133752800	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:133752400-133753000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:133752400-133753200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:133752400-133754200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:133752400-133754400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:133752400-133754400	Weak transcription	Psoas Muscle	Psoas
22	chr6:133752400-133763400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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