Variant report

Variant	rs56140782
Chromosome Location	chr6:133775841-133775842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11961662	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12660521	0.94[ASN][1000 genomes]
rs12661876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12663756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12664324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665147	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12665159	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12665690	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17062561	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2076255	0.97[EUR][1000 genomes]
rs2076256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360637	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756873	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3777853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777856	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3777860	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3798355	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41286198	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs41286208	1.00[AFR][1000 genomes]
rs4895966	0.89[EUR][1000 genomes]
rs4895967	0.97[EUR][1000 genomes]
rs55963818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56088418	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56182562	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56241016	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58512026	0.93[ASN][1000 genomes]
rs6922694	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6933900	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544919	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544934	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544945	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs970984	0.95[ASN][1000 genomes]
rs970985	0.95[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133749800-133777600	Weak transcription	Hela-S3	cervix
2	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
3	chr6:133769400-133777600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:133774800-133780600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:133775000-133777400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:133775400-133777400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:133775800-133777600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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