Variant report

Variant	rs17062561
Chromosome Location	chr6:133768525-133768526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11961662	1.00[EUR][1000 genomes]
rs12660521	1.00[CHB][hapmap];0.82[CHD][hapmap];0.83[MEX][hapmap];0.92[ASN][1000 genomes]
rs12661876	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12663756	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12664324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12665147	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12665159	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12665690	1.00[CEU][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs2076255	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2076256	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28360637	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756873	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3777853	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3777860	1.00[CEU][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3777863	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs3798355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41286198	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs41286208	1.00[AFR][1000 genomes]
rs4895966	0.89[EUR][1000 genomes]
rs4895967	1.00[CEU][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs55963818	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56088418	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56140782	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56182562	0.97[EUR][1000 genomes]
rs56241016	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58512026	0.93[ASN][1000 genomes]
rs6922694	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6933900	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544919	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544934	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544945	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs970984	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs970985	1.00[CHB][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133749800-133777600	Weak transcription	Hela-S3	cervix
2	chr6:133756800-133772600	Weak transcription	Right Atrium	heart
3	chr6:133758400-133769000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
5	chr6:133767200-133769400	Enhancers	Liver	Liver
6	chr6:133767400-133769200	Weak transcription	NHLF	lung
7	chr6:133767800-133770200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:133768000-133768600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:133768000-133768600	Weak transcription	Adipose Nuclei	Adipose
10	chr6:133768000-133769000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:133768400-133769800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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