Variant report

Variant	rs41286208
Chromosome Location	chr6:133852245-133852246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12661876	1.00[AFR][1000 genomes]
rs12663756	1.00[AFR][1000 genomes]
rs12664324	1.00[AFR][1000 genomes]
rs17062561	1.00[AFR][1000 genomes]
rs2076256	1.00[AFR][1000 genomes]
rs41286198	1.00[AFR][1000 genomes]
rs55963818	1.00[AFR][1000 genomes]
rs56088418	1.00[AFR][1000 genomes]
rs56140782	1.00[AFR][1000 genomes]
rs56241016	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886681	chr6:133833284-133869617	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133823200-133869600	Weak transcription	Psoas Muscle	Psoas
2	chr6:133824200-133854200	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:133824400-133854800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:133824400-133861600	Weak transcription	Ovary	ovary
5	chr6:133825600-133857200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:133826600-133862400	Weak transcription	Fetal Lung	lung
7	chr6:133836800-133854000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:133837400-133863600	Weak transcription	A549	lung
9	chr6:133845400-133856400	Weak transcription	Fetal Kidney	kidney
10	chr6:133845400-133860400	Weak transcription	HSMMtube	muscle
11	chr6:133847400-133854000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:133847800-133853800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:133847800-133856400	Weak transcription	Hela-S3	cervix
14	chr6:133850000-133854000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:133852200-133852400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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