Variant report

Variant	rs12664324
Chromosome Location	chr6:133755595-133755596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11961662	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12660521	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs12661876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12663756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12665147	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12665159	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12665690	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17062561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2076255	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2076256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360637	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756873	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3777853	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3777860	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3777863	1.00[CEU][hapmap];0.80[CHB][hapmap];0.93[JPT][hapmap]
rs3798355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41286198	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs41286208	1.00[AFR][1000 genomes]
rs4895966	0.89[EUR][1000 genomes]
rs4895967	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs55963818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56088418	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56140782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56182562	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56241016	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58512026	0.93[ASN][1000 genomes]
rs6922694	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6933900	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544919	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544934	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544945	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs970984	0.93[CHB][hapmap];0.95[ASN][1000 genomes]
rs970985	0.93[CHB][hapmap];0.95[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133732600-133758200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133749800-133777600	Weak transcription	Hela-S3	cervix
3	chr6:133752400-133763400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:133753600-133755800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:133753600-133756400	Weak transcription	Left Ventricle	heart
6	chr6:133753600-133756400	Weak transcription	Right Atrium	heart
7	chr6:133753800-133757800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:133753800-133757800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:133753800-133758000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:133754000-133756000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:133754000-133756200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:133754200-133756400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:133754200-133756400	Weak transcription	HSMMtube	muscle
14	chr6:133754600-133756000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:133754800-133756400	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:133755000-133756400	Enhancers	Liver	Liver
17	chr6:133755200-133756200	Weak transcription	Brain Substantia Nigra	brain
18	chr6:133755200-133756400	Weak transcription	Psoas Muscle	Psoas

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