Variant report

Variant	rs2076255
Chromosome Location	chr6:133783255-133783256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11961662	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12661876	0.97[EUR][1000 genomes]
rs12663756	0.97[EUR][1000 genomes]
rs12664324	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12665147	0.97[EUR][1000 genomes]
rs12665159	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12665690	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17062561	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2076256	0.97[EUR][1000 genomes]
rs28360637	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3756873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777853	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs3777860	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3777863	1.00[CEU][hapmap]
rs3798355	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41286198	0.86[EUR][1000 genomes]
rs4895966	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4895967	1.00[CEU][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55963818	0.97[EUR][1000 genomes]
rs56088418	0.83[EUR][1000 genomes]
rs56140782	0.97[EUR][1000 genomes]
rs56182562	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56241016	0.83[EUR][1000 genomes]
rs6922694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6933900	1.00[CEU][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73544919	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73544934	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73544945	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133777800-133785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:133778000-133783400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:133778400-133783400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:133778400-133789000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:133779600-133783400	Weak transcription	Hela-S3	cervix
7	chr6:133780800-133796800	Weak transcription	NHLF	lung
8	chr6:133781400-133783400	Weak transcription	HSMMtube	muscle
9	chr6:133782000-133789600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:133782000-133790400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:133782000-133811600	Weak transcription	A549	lung
12	chr6:133782200-133783400	Enhancers	Fetal Brain Male	brain
13	chr6:133782200-133790000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:133782400-133806400	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links