Variant report

Variant	rs3777863
Chromosome Location	chr6:133778614-133778615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11961662	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12660521	0.85[ASN][1000 genomes]
rs12661876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12663756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12664324	1.00[CEU][hapmap];0.80[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12665147	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12665159	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12665690	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17062561	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2076255	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2076256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28360637	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756873	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3777853	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3777856	0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3777860	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3798355	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41286198	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs41286208	1.00[AFR][1000 genomes]
rs4895966	0.89[EUR][1000 genomes]
rs4895967	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs55963818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56088418	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56140782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56182562	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56241016	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58512026	0.84[ASN][1000 genomes]
rs6922694	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6933900	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544919	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544934	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73544945	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs970984	0.86[ASN][1000 genomes]
rs970985	0.86[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133774800-133780600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:133777400-133779000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:133777400-133779800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:133777600-133779600	Strong transcription	Hela-S3	cervix
6	chr6:133777800-133778800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:133777800-133785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:133778000-133779600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:133778000-133783400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:133778400-133779200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:133778400-133783400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:133778400-133789000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:133778600-133780000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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