Variant report

Variant	rs3777837
Chromosome Location	chr6:133732089-133732090
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133723447..133725781-chr6:133730528..133732240,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11962647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11963218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11963948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11965224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11966493	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11967280	0.95[ASN][1000 genomes]
rs11969822	0.93[ASN][1000 genomes]
rs17062555	0.83[AMR][1000 genomes]
rs17062564	0.91[ASN][1000 genomes]
rs17062574	0.83[AMR][1000 genomes]
rs3777817	0.93[ASN][1000 genomes]
rs3777820	0.93[ASN][1000 genomes]
rs3777832	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3777833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3777835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3777839	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3777840	0.95[ASN][1000 genomes]
rs3777842	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3777846	0.95[ASN][1000 genomes]
rs3777859	0.95[ASN][1000 genomes]
rs3822931	0.93[ASN][1000 genomes]
rs3822932	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3822933	1.00[ASN][1000 genomes]
rs5022972	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57845656	0.83[AMR][1000 genomes]
rs58450371	0.95[ASN][1000 genomes]
rs6912802	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6934520	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6940775	0.95[ASN][1000 genomes]
rs6941577	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73544941	0.95[ASN][1000 genomes]
rs73561742	0.95[ASN][1000 genomes]
rs73561754	0.95[ASN][1000 genomes]
rs73561755	0.95[ASN][1000 genomes]
rs73561756	0.95[ASN][1000 genomes]
rs73561759	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025700	chr6:133726264-133748758	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604699	chr6:133726502-133747840	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1019755	chr6:133726502-133748758	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020698	chr6:133726502-133751161	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv525971	chr6:133726646-133753825	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133720200-133748400	Weak transcription	Hela-S3	cervix
2	chr6:133720400-133749600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:133726600-133752200	Weak transcription	Right Atrium	heart
4	chr6:133728800-133732200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:133729400-133734000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:133729400-133736600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:133730200-133733800	Weak transcription	Psoas Muscle	Psoas
8	chr6:133731200-133732600	Enhancers	A549	lung
9	chr6:133731200-133733200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:133731400-133732600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:133731400-133732800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:133731600-133732400	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr6:133731800-133732200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:133731800-133732200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:133731800-133732200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:133731800-133732600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:133731800-133732600	Enhancers	Left Ventricle	heart
18	chr6:133731800-133732600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:133731800-133733400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:133732000-133732200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:133732000-133732400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:133732000-133733000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:133732000-133744000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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