Variant report

Variant	rs7771387
Chromosome Location	chr6:4917157-4917158
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4912482..4914985-chr6:4916799..4919032,2	K562	blood:
2	chr6:4912937..4915040-chr6:4916951..4919772,2	MCF-7	breast:
3	chr6:4916273..4918600-chr6:4919127..4921256,2	MCF-7	breast:
4	chr6:4916999..4918690-chr6:4927694..4930085,2	K562	blood:

Variant related genes	Relation type
ENSG00000153046	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1113341	0.92[EUR][1000 genomes]
rs1891046	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3930304	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4960047	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4960049	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62384663	0.87[ASN][1000 genomes]
rs6904931	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6924037	0.94[ASN][1000 genomes]
rs7738275	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738459	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739834	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742807	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7759221	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9378917	0.82[ASN][1000 genomes]
rs9378918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9378919	0.94[ASN][1000 genomes]
rs9378920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9392068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9392640	0.97[ASN][1000 genomes]
rs9392641	0.85[ASN][1000 genomes]
rs9405786	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4900200-4918800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:4902000-4918400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:4905800-4931200	Weak transcription	HepG2	liver
4	chr6:4907600-4925200	Weak transcription	Fetal Heart	heart
5	chr6:4908000-4935600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:4908200-4934800	Weak transcription	Primary B cells from cord blood	blood
7	chr6:4908800-4920800	Weak transcription	Thymus	Thymus
8	chr6:4908800-4924400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:4911000-4930400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:4911000-4935200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:4912800-4931200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:4913000-4918600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:4913200-4936000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:4913200-4941000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:4913600-4919200	Enhancers	Primary T cells from cord blood	blood
16	chr6:4913600-4938000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:4914000-4917200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:4914000-4918200	Enhancers	Fetal Thymus	thymus
19	chr6:4914000-4930600	Weak transcription	A549	lung
20	chr6:4914200-4918400	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:4914600-4918200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr6:4914800-4918400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:4914800-4919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:4914800-4920200	Weak transcription	K562	blood
25	chr6:4914800-4920800	Weak transcription	Colonic Mucosa	Colon
26	chr6:4914800-4922200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr6:4914800-4924600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:4914800-4930400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:4914800-4930400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:4915000-4919200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:4915000-4919200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:4915000-4921200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:4915000-4921400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:4915000-4921400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:4915000-4922000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:4915000-4929800	Weak transcription	Hela-S3	cervix
37	chr6:4915200-4917200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:4915200-4918800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:4915200-4921800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:4915200-4922000	Weak transcription	Adipose Nuclei	Adipose
41	chr6:4915200-4925000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:4915200-4931600	Weak transcription	Esophagus	oesophagus
43	chr6:4915400-4918000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:4915400-4920200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:4915400-4920800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:4915400-4921200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:4915400-4922200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:4915400-4922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:4915400-4922200	Weak transcription	Lung	lung
50	chr6:4915400-4922800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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