Variant report

Variant	rs9405786
Chromosome Location	chr6:4923184-4923185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4921448..4923447-chr6:4939965..4942220,2	MCF-7	breast:
2	chr6:4923127..4925328-chr6:4925522..4928409,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1891045	0.84[EUR][1000 genomes]
rs1891046	0.83[ASN][1000 genomes]
rs2179269	0.89[AMR][1000 genomes]
rs3930304	0.94[ASN][1000 genomes]
rs4144546	0.94[ASN][1000 genomes]
rs4960046	0.84[EUR][1000 genomes]
rs4960049	0.96[ASN][1000 genomes]
rs62384662	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62384663	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62384665	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62386575	0.89[AMR][1000 genomes]
rs62386578	0.89[AMR][1000 genomes]
rs62386584	0.94[AMR][1000 genomes]
rs62386585	0.94[AMR][1000 genomes]
rs62386587	0.89[AMR][1000 genomes]
rs62386590	0.89[AMR][1000 genomes]
rs62386591	0.94[AMR][1000 genomes]
rs62386593	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62386594	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62386612	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62386614	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6904931	0.97[ASN][1000 genomes]
rs6910368	0.85[CEU][hapmap]
rs6918626	0.85[CEU][hapmap];0.89[AMR][1000 genomes]
rs6924037	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738275	0.94[ASN][1000 genomes]
rs7738459	0.94[ASN][1000 genomes]
rs7739834	0.94[ASN][1000 genomes]
rs7742807	0.81[ASN][1000 genomes]
rs7759221	0.94[ASN][1000 genomes]
rs7770206	0.94[ASN][1000 genomes]
rs7771387	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs808608	0.85[EUR][1000 genomes]
rs9378917	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9378918	0.97[ASN][1000 genomes]
rs9378919	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9378920	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs9392068	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9392640	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9392641	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4905800-4931200	Weak transcription	HepG2	liver
2	chr6:4907600-4925200	Weak transcription	Fetal Heart	heart
3	chr6:4908000-4935600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:4908200-4934800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:4908800-4924400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:4911000-4930400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:4911000-4935200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:4912800-4931200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:4913200-4936000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:4913200-4941000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:4913600-4938000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:4914000-4930600	Weak transcription	A549	lung
13	chr6:4914800-4924600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:4914800-4930400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:4914800-4930400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:4915000-4929800	Weak transcription	Hela-S3	cervix
17	chr6:4915200-4925000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:4915200-4931600	Weak transcription	Esophagus	oesophagus
19	chr6:4915400-4927000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:4915400-4927800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:4915400-4928600	Weak transcription	HMEC	breast
22	chr6:4915400-4930200	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:4915400-4930600	Weak transcription	Gastric	stomach
24	chr6:4915400-4931000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:4915400-4931800	Weak transcription	Pancreas	Pancrea
26	chr6:4915600-4931200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:4915600-4931200	Weak transcription	NHEK	skin
28	chr6:4915800-4928200	Weak transcription	HSMMtube	muscle
29	chr6:4915800-4928400	Weak transcription	NH-A	brain
30	chr6:4915800-4928400	Weak transcription	Osteobl	bone
31	chr6:4915800-4930000	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:4915800-4930400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:4915800-4930600	Weak transcription	Placenta	Placenta
34	chr6:4915800-4931600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:4915800-4942400	Weak transcription	Aorta	Aorta
36	chr6:4916000-4924400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:4916000-4925000	Weak transcription	Fetal Kidney	kidney
38	chr6:4916200-4929200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:4916200-4933200	Weak transcription	Fetal Stomach	stomach
40	chr6:4916600-4935400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr6:4917000-4930400	Weak transcription	Small Intestine	intestine
42	chr6:4917000-4931400	Weak transcription	Fetal Intestine Small	intestine
43	chr6:4917200-4930400	Weak transcription	Right Ventricle	heart
44	chr6:4917200-4935000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:4917600-4924200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:4917800-4930400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:4918000-4936000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:4918200-4930200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:4918600-4924200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:4919600-4924400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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