Variant report

Variant	rs7771394
Chromosome Location	chr6:24324421-24324422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10456303	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10456304	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12192947	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12206452	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12207932	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12207989	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12211069	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12213122	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1417411	0.91[ASN][1000 genomes]
rs1935033	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2153657	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4269365	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55937934	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6904234	0.83[JPT][hapmap]
rs6904343	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7741108	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9356933	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9366567	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9467110	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601147	chr6:24322287-24326144	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv601148	chr6:24322287-24326596	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv601149	chr6:24322287-24327501	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv601150	chr6:24323858-24326596	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	nsv601151	chr6:24323858-24327501	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv511339	chr6:24323858-24330240	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7771394	MRS2L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24316400-24326800	Weak transcription	Pancreas	Pancrea
2	chr6:24316600-24324800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24322200-24324800	Enhancers	Fetal Kidney	kidney
4	chr6:24322400-24325400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:24322600-24325000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:24323200-24325000	Enhancers	NH-A	brain
7	chr6:24323600-24324600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:24323600-24324800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:24323600-24325000	Flanking Active TSS	HepG2	liver
10	chr6:24323600-24325600	Enhancers	A549	lung
11	chr6:24323800-24324600	Enhancers	Hela-S3	cervix
12	chr6:24323800-24324800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:24323800-24324800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:24323800-24325400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:24324000-24324600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr6:24324000-24324600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:24324000-24324600	Enhancers	HSMMtube	muscle
18	chr6:24324000-24324600	Enhancers	NHEK	skin
19	chr6:24324000-24324800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:24324000-24325400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:24324200-24324600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:24324200-24324600	Enhancers	HMEC	breast
23	chr6:24324200-24324800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:24324200-24325000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:24324200-24329400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:24324400-24332000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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