Variant report

Variant	rs7771757
Chromosome Location	chr6:70715536-70715537
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1934904	0.81[ASN][1000 genomes]
rs2273426	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3805978	0.81[ASN][1000 genomes]
rs3805986	0.80[EUR][1000 genomes]
rs6910162	0.81[ASN][1000 genomes]
rs6912321	0.81[ASN][1000 genomes]
rs7770758	0.84[ASN][1000 genomes]
rs9346367	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9346368	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9351779	0.84[ASN][1000 genomes]
rs9354904	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9364070	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9364071	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9454932	0.81[ASN][1000 genomes]
rs9454937	0.81[ASN][1000 genomes]
rs9454944	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs978290	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470832	chr6:70654657-70767756	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv603637	chr6:70658432-70740151	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv603638	chr6:70658432-70740306	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70711800-70718600	Weak transcription	Fetal Heart	heart
2	chr6:70714000-70716200	Strong transcription	Primary B cells from cord blood	blood
3	chr6:70715400-70715800	ZNF genes & repeats	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links