Variant report

Variant	rs2273426
Chromosome Location	chr6:70733547-70733548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70733478..70735674-chr6:111948074..111949663,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12110870	0.80[ASN][1000 genomes]
rs1361518	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs1934904	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs2345744	0.88[ASN][1000 genomes]
rs3793032	0.92[JPT][hapmap]
rs3793033	0.93[JPT][hapmap]
rs3793035	0.92[JPT][hapmap];0.82[YRI][hapmap];0.80[ASN][1000 genomes]
rs3793038	0.92[CEU][hapmap]
rs3805959	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs3805963	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs3805967	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs3805978	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3805986	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs3805987	0.92[CEU][hapmap]
rs4036075	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs58134065	0.80[ASN][1000 genomes]
rs6455351	0.86[JPT][hapmap]
rs6455352	0.80[CHB][hapmap];0.93[JPT][hapmap]
rs6455353	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6903421	0.92[JPT][hapmap]
rs6906337	0.82[EUR][1000 genomes]
rs6910162	0.90[ASN][1000 genomes]
rs6912321	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6935032	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs6935585	0.83[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6938495	0.93[JPT][hapmap]
rs73484256	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7742627	0.92[JPT][hapmap]
rs7751448	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7756062	0.85[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7770758	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7771757	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9294855	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs9346367	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9346368	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9351779	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9354904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9360410	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs9364070	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9364071	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9446171	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs9446172	0.84[JPT][hapmap]
rs9454912	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs9454930	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9454932	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9454935	0.85[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9454937	0.86[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs9454944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978290	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv470832	chr6:70654657-70767756	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv603637	chr6:70658432-70740151	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv603638	chr6:70658432-70740306	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1026836	chr6:70727747-70849014	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv525985	chr6:70728202-70766504	Strong transcription Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70716200-70734000	Weak transcription	Primary B cells from cord blood	blood
2	chr6:70733000-70748600	Weak transcription	GM12878-XiMat	blood
3	chr6:70733400-70737000	Strong transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links