Variant report

Variant	rs6903421
Chromosome Location	chr6:70672128-70672129
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70661572..70663140-chr6:70670607..70672802,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10485244	1.00[CEU][hapmap];0.85[GIH][hapmap];0.82[EUR][1000 genomes]
rs12110870	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1361518	0.95[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs17766479	1.00[CEU][hapmap]
rs1934904	0.82[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs2273426	0.92[JPT][hapmap]
rs2345744	0.89[CEU][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3793031	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793032	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793035	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3793036	0.80[EUR][1000 genomes]
rs3805959	1.00[ASW][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.92[JPT][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3805961	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs3805962	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3805963	0.94[ASW][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.99[ASN][1000 genomes]
rs3805965	0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3805966	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs3805967	1.00[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3805968	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3805973	0.82[CEU][hapmap];0.85[GIH][hapmap];0.80[EUR][1000 genomes]
rs3805977	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3805978	0.91[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs4036075	1.00[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs56293172	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56922945	0.80[EUR][1000 genomes]
rs58134065	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59501442	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59599861	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59707679	0.87[EUR][1000 genomes]
rs60134810	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6455351	0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6455352	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6455353	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6899719	0.89[ASN][1000 genomes]
rs6910162	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6912321	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6935585	0.91[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6938320	0.82[EUR][1000 genomes]
rs6938495	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs73480070	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs73484256	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7742627	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751448	0.95[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7756062	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7761968	0.82[EUR][1000 genomes]
rs9294855	0.95[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9346367	0.88[CHD][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs9346368	0.80[ASN][1000 genomes]
rs9351779	0.90[JPT][hapmap]
rs9354904	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs9360410	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.99[ASN][1000 genomes]
rs9364070	0.80[ASN][1000 genomes]
rs9446168	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9446169	1.00[CEU][hapmap]
rs9446170	1.00[CEU][hapmap]
rs9446171	1.00[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.96[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9446172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9446177	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9454909	0.88[ASN][1000 genomes]
rs9454910	1.00[CEU][hapmap]
rs9454912	0.89[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs9454914	1.00[CEU][hapmap]
rs9454919	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9454930	0.90[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9454932	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9454935	0.83[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9454937	0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9454944	0.90[CHD][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap]
rs978290	0.87[CHD][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv886141	chr6:70590638-70694162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv463151	chr6:70625166-70694162	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv603636	chr6:70625166-70694162	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv470832	chr6:70654657-70767756	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv603637	chr6:70658432-70740151	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv603638	chr6:70658432-70740306	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv2755013	chr6:70672128-70694162	Strong transcription Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70669400-70676000	Strong transcription	Primary B cells from cord blood	blood
2	chr6:70669600-70673800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr6:70670800-70672200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr6:70670800-70672200	Enhancers	HSMMtube	muscle
5	chr6:70671200-70672200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:70672000-70672400	Strong transcription	GM12878-XiMat	blood
7	chr6:70672000-70675400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links