Variant report

Variant	rs58134065
Chromosome Location	chr6:70693468-70693469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12110870	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361518	0.96[ASN][1000 genomes]
rs1934904	0.91[ASN][1000 genomes]
rs2273426	0.80[ASN][1000 genomes]
rs2345744	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3793031	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3793032	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3793033	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3793035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793036	0.82[EUR][1000 genomes]
rs3805959	0.98[ASN][1000 genomes]
rs3805963	0.98[ASN][1000 genomes]
rs3805965	0.98[ASN][1000 genomes]
rs3805967	0.98[ASN][1000 genomes]
rs3805977	0.81[AMR][1000 genomes]
rs3805978	0.91[ASN][1000 genomes]
rs4036075	0.98[ASN][1000 genomes]
rs56293172	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56922945	0.82[EUR][1000 genomes]
rs59501442	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59599861	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59707679	0.85[EUR][1000 genomes]
rs60134810	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6455351	0.93[ASN][1000 genomes]
rs6455352	0.98[ASN][1000 genomes]
rs6455353	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6899719	0.89[ASN][1000 genomes]
rs6903421	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6910162	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6912321	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6935585	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6938495	0.98[ASN][1000 genomes]
rs73480070	0.98[ASN][1000 genomes]
rs73484256	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7742627	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7751448	0.93[ASN][1000 genomes]
rs7756062	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7770758	0.80[ASN][1000 genomes]
rs9294855	0.93[ASN][1000 genomes]
rs9346367	0.81[ASN][1000 genomes]
rs9346368	0.81[ASN][1000 genomes]
rs9354904	0.81[ASN][1000 genomes]
rs9360410	0.98[ASN][1000 genomes]
rs9364070	0.81[ASN][1000 genomes]
rs9446168	0.93[ASN][1000 genomes]
rs9446171	0.96[ASN][1000 genomes]
rs9446172	0.97[ASN][1000 genomes]
rs9446177	0.81[AMR][1000 genomes]
rs9454909	0.87[ASN][1000 genomes]
rs9454912	0.94[ASN][1000 genomes]
rs9454919	0.98[ASN][1000 genomes]
rs9454930	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9454932	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9454935	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9454937	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9454944	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv886141	chr6:70590638-70694162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv463151	chr6:70625166-70694162	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv603636	chr6:70625166-70694162	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv470832	chr6:70654657-70767756	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv603637	chr6:70658432-70740151	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv603638	chr6:70658432-70740306	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv2755013	chr6:70672128-70694162	Strong transcription Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70672400-70697600	Weak transcription	GM12878-XiMat	blood
2	chr6:70686600-70704200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:70686800-70698200	Weak transcription	Primary B cells from peripheral blood	blood

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