Variant report

Variant	rs7771786
Chromosome Location	chr6:101848893-101848894
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101845046..101846938-chr6:101848275..101850484,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164418	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1338156	0.89[ASN][1000 genomes]
rs1352039	0.92[ASN][1000 genomes]
rs1832411	0.89[ASN][1000 genomes]
rs1933356	0.92[ASN][1000 genomes]
rs2518177	0.89[ASN][1000 genomes]
rs2579928	0.91[ASN][1000 genomes]
rs2579930	0.89[ASN][1000 genomes]
rs2629983	0.87[ASN][1000 genomes]
rs2629989	0.83[ASN][1000 genomes]
rs2787572	0.95[ASN][1000 genomes]
rs2852499	0.98[ASN][1000 genomes]
rs4103516	0.89[ASN][1000 genomes]
rs516735	0.83[ASN][1000 genomes]
rs517552	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101842200-101849600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:101842400-101849600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:101846000-101849600	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr6:101846400-101849200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
5	chr6:101846400-101851600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
6	chr6:101846600-101850200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
7	chr6:101847200-101849200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:101847600-101849000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:101847800-101849400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:101847800-101849600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:101847800-101849600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:101847800-101849800	Weak transcription	Right Atrium	heart
13	chr6:101847800-101851400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:101848000-101849400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
15	chr6:101848200-101849000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
16	chr6:101848200-101849400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr6:101848400-101849200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr6:101848400-101849200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:101848400-101849200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:101848400-101849400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
21	chr6:101848600-101849000	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
22	chr6:101848600-101849000	Active TSS	Fetal Brain Female	brain
23	chr6:101848600-101849200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
24	chr6:101848600-101849400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:101848600-101849400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
26	chr6:101848600-101851600	Active TSS	Brain Angular Gyrus	brain
27	chr6:101848800-101849000	Enhancers	H9 Cell Line	embryonic stem cell
28	chr6:101848800-101849200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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