Variant report

Variant	rs2518177
Chromosome Location	chr6:101827414-101827415
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1338156	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1352039	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1832411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1843487	0.92[EUR][1000 genomes]
rs189739	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1933356	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2518173	0.92[AFR][1000 genomes]
rs2518174	0.94[AFR][1000 genomes]
rs2518319	0.92[AFR][1000 genomes]
rs2518320	0.94[AFR][1000 genomes]
rs2579928	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2579930	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2629982	0.90[AFR][1000 genomes]
rs2629983	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2629989	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2787572	0.87[ASN][1000 genomes]
rs283182	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs283188	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs283211	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs283228	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2852499	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs386552	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4103516	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs439291	0.91[EUR][1000 genomes]
rs516735	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs517552	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs597750	0.85[EUR][1000 genomes]
rs705629	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7771786	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101827400-101828000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:101827400-101830200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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