Variant report

Variant	rs7771841
Chromosome Location	chr6:132151105-132151106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132128149..132132112-chr6:132147030..132152072,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10457576	0.91[CHB][hapmap]
rs12191120	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12201710	0.91[CHB][hapmap]
rs1800949	0.82[CHB][hapmap]
rs2021315	0.89[ASN][1000 genomes]
rs2064774	0.87[ASN][1000 genomes]
rs2327173	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916495	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs6939185	0.82[CHB][hapmap]
rs71572984	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs766592	0.82[CHB][hapmap]
rs7756163	0.82[CHB][hapmap]
rs7771242	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs858335	0.94[ASN][1000 genomes]
rs858339	0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs943003	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7771841	VNN1	cis	lymphoblastoid	seeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132132200-132157800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:132132800-132162400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:132132800-132162800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:132136800-132160200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:132138600-132163000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:132141000-132176000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:132141200-132152000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:132141200-132158000	Weak transcription	Aorta	Aorta
9	chr6:132141600-132151600	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:132141600-132172000	Weak transcription	HSMM	muscle
11	chr6:132143200-132157800	Weak transcription	Fetal Intestine Small	intestine
12	chr6:132145800-132171800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:132147400-132152200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:132147600-132151600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:132147600-132199200	Weak transcription	Fetal Stomach	stomach
16	chr6:132148000-132152000	Weak transcription	Osteobl	bone
17	chr6:132148000-132152200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:132148200-132151200	Strong transcription	HepG2	liver
19	chr6:132148600-132152400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:132149200-132161800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:132149400-132152400	Weak transcription	NHDF-Ad	bronchial
22	chr6:132149600-132156800	Weak transcription	Liver	Liver
23	chr6:132149600-132162000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:132149800-132152000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:132149800-132152000	Weak transcription	NHLF	lung
26	chr6:132149800-132172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:132150000-132151200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:132150000-132151400	Enhancers	Fetal Kidney	kidney
29	chr6:132150000-132152600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:132150200-132152200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:132150800-132151600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:132150800-132151600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:132150800-132151600	Enhancers	Ovary	ovary
34	chr6:132150800-132152200	Enhancers	Pancreas	Pancrea
35	chr6:132151000-132151200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:132151000-132151200	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links