Variant report

Variant	rs10457576
Chromosome Location	chr6:132147405-132147406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132141202..132144073-chr6:132145650..132147545,3	K562	blood:
2	chr6:132128149..132132112-chr6:132147030..132152072,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200895	Chromatin interaction
ENSG00000219532	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12201710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1800949	0.94[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2021315	0.85[ASN][1000 genomes]
rs2327173	0.84[CHB][hapmap]
rs6939185	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs766592	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7756163	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7771841	0.91[CHB][hapmap]
rs858339	0.84[CHB][hapmap]
rs943003	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9493103	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132132200-132148800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:132132200-132157800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:132132800-132162400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:132132800-132162800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:132136800-132160200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:132138200-132148400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:132138600-132163000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:132139400-132149000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:132141000-132176000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:132141200-132152000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:132141200-132158000	Weak transcription	Aorta	Aorta
12	chr6:132141400-132149000	Weak transcription	NHDF-Ad	bronchial
13	chr6:132141600-132151600	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:132141600-132172000	Weak transcription	HSMM	muscle
15	chr6:132141800-132147800	Enhancers	HepG2	liver
16	chr6:132143200-132157800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:132144200-132149600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:132144600-132149000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:132145000-132147600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:132145000-132149800	Weak transcription	Fetal Thymus	thymus
21	chr6:132145600-132148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:132145600-132148800	Weak transcription	Placenta	Placenta
23	chr6:132145600-132150800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:132145800-132171800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:132146400-132148400	Enhancers	Liver	Liver
26	chr6:132146800-132148000	Enhancers	Osteobl	bone
27	chr6:132147000-132148000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:132147200-132147600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:132147200-132147600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:132147200-132147600	Enhancers	Fetal Stomach	stomach
31	chr6:132147200-132147800	Enhancers	NHLF	lung
32	chr6:132147200-132148000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:132147200-132148600	Enhancers	Fetal Kidney	kidney
34	chr6:132147200-132148600	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr6:132147400-132147800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:132147400-132147800	Weak transcription	Pancreas	Pancrea
37	chr6:132147400-132149000	Weak transcription	Gastric	stomach
38	chr6:132147400-132152200	Enhancers	Placenta Amnion	Placenta Amnion

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