Variant report

Variant	rs9493103
Chromosome Location	chr6:132134751-132134752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10457576	0.91[ASN][1000 genomes]
rs12201710	0.92[ASN][1000 genomes]
rs1800949	0.85[ASN][1000 genomes]
rs2021315	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4418212	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6939185	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7756163	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943003	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv5479	chr6:132101897-132136593	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132130400-132140000	Weak transcription	HSMM	muscle
2	chr6:132130800-132140000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:132132000-132137800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:132132200-132135400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:132132200-132136400	Weak transcription	Liver	Liver
6	chr6:132132200-132138200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:132132200-132148800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:132132200-132157800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:132132400-132136200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:132132800-132162400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:132132800-132162800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:132133000-132142400	Weak transcription	Pancreas	Pancrea
13	chr6:132133600-132135000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:132133600-132138000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:132134600-132135000	Enhancers	Aorta	Aorta
16	chr6:132134600-132135200	Genic enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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