Variant report

Variant	rs7772210
Chromosome Location	chr6:36936771-36936772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36852534..36855204-chr6:36935328..36937029,2	MCF-7	breast:
2	chr6:36885599..36889594-chr6:36935719..36938209,3	MCF-7	breast:
3	chr6:36853681..36855481-chr6:36934818..36937310,2	K562	blood:
4	chr6:36934586..36938326-chr6:36939684..36941889,3	MCF-7	breast:
5	chr6:36934908..36939247-chr6:36952489..36955593,6	MCF-7	breast:
6	chr6:36903375..36906327-chr6:36934903..36936989,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198663	Chromatin interaction
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2293383	0.99[EUR][1000 genomes]
rs6918432	0.94[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs831506	0.82[CHB][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs9462250	0.88[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv525288	chr6:36934244-36937647	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7772210	TSPO2	cis	cerebellum	SCAN
rs7772210	PI16	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36929600-36936800	Weak transcription	Hela-S3	cervix
2	chr6:36931600-36938600	Weak transcription	Fetal Brain Male	brain
3	chr6:36931800-36948600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:36932400-36946800	Strong transcription	Fetal Brain Female	brain
5	chr6:36932400-36951800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:36932800-36947400	Strong transcription	Fetal Stomach	stomach
7	chr6:36933200-36937200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:36933800-36938200	Strong transcription	Fetal Thymus	thymus
9	chr6:36933800-36940400	Strong transcription	Adipose Nuclei	Adipose
10	chr6:36933800-36946800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:36933800-36946800	Strong transcription	Brain Anterior Caudate	brain
12	chr6:36933800-36947200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:36934000-36937200	Strong transcription	HSMM	muscle
14	chr6:36934000-36940600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:36934000-36941000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:36934000-36946600	Strong transcription	Thymus	Thymus
17	chr6:36934000-36946800	Strong transcription	Primary T cells from cord blood	blood
18	chr6:36934000-36946800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr6:36934000-36946800	Strong transcription	Colon Smooth Muscle	Colon
20	chr6:36934000-36949600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:36934000-36951600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:36934200-36940800	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr6:36934200-36941000	Strong transcription	Brain Hippocampus Middle	brain
24	chr6:36934200-36946600	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:36934200-36946600	Strong transcription	NHDF-Ad	bronchial
26	chr6:36934200-36946800	Strong transcription	Brain Germinal Matrix	brain
27	chr6:36934200-36947000	Strong transcription	Osteobl	bone
28	chr6:36934200-36947200	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:36934200-36947400	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:36934200-36949200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:36934200-36950400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:36934400-36937800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:36934400-36938000	Genic enhancers	Stomach Mucosa	stomach
34	chr6:36934400-36938200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:36934400-36939200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:36934400-36943000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:36934400-36946000	Strong transcription	Primary B cells from cord blood	blood
38	chr6:36934400-36946400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:36934400-36946600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:36934400-36946600	Strong transcription	Aorta	Aorta
41	chr6:36934400-36946600	Strong transcription	Brain Cingulate Gyrus	brain
42	chr6:36934400-36946600	Strong transcription	Colonic Mucosa	Colon
43	chr6:36934400-36947200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:36934400-36947200	Strong transcription	NHLF	lung
45	chr6:36934400-36947400	Strong transcription	Primary B cells from peripheral blood	blood
46	chr6:36934400-36947800	Strong transcription	Dnd41	blood
47	chr6:36934400-36949200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:36934600-36937600	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr6:36934600-36947200	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:36934600-36947400	Strong transcription	NH-A	brain

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