Variant report

Variant	rs7773157
Chromosome Location	chr6:70846022-70846023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2093375	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2145904	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2181011	1.00[CEU][hapmap];0.87[GIH][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes]
rs2208609	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3763247	0.90[EUR][1000 genomes]
rs3763248	0.91[EUR][1000 genomes]
rs3806031	1.00[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes]
rs3806032	1.00[CEU][hapmap];0.86[GIH][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes]
rs3806033	1.00[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes]
rs3806037	1.00[CEU][hapmap];0.87[GIH][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes]
rs3828772	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6455355	1.00[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes]
rs6940436	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9454977	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1026836	chr6:70727747-70849014	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7773157	DDX43	cis	parietal	SCAN
rs7773157	C6orf57	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70842400-70875200	Weak transcription	GM12878-XiMat	blood
2	chr6:70844200-70846600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:70845000-70846400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:70845000-70846400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:70845000-70846400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:70845400-70846400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:70845400-70846400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:70845400-70846400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:70845400-70846600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:70845400-70849000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:70845600-70846800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:70845600-70849000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:70845600-70851600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:70845800-70846800	Weak transcription	HSMMtube	muscle
15	chr6:70845800-70847600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:70846000-70847600	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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