Variant report

Variant	rs7773278
Chromosome Location	chr6:144342818-144342819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144342771..144345121-chr6:144347638..144350267,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11155339	0.84[AFR][1000 genomes]
rs11754802	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs11756126	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs11757814	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs11759634	0.87[ASN][1000 genomes]
rs12524155	0.80[AFR][1000 genomes]
rs12528481	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12529969	0.85[ASN][1000 genomes]
rs17073300	0.85[ASN][1000 genomes]
rs17073303	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2144571	0.85[ASN][1000 genomes]
rs2281476	0.93[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.92[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28364590	0.84[ASN][1000 genomes]
rs55769736	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs56360488	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs59090158	0.89[ASN][1000 genomes]
rs6923789	0.85[ASN][1000 genomes]
rs6930286	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs6930429	0.93[JPT][hapmap];0.86[MEX][hapmap];0.85[ASN][1000 genomes]
rs6937128	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.81[LWK][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6937531	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73006291	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7752731	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs9496845	0.85[ASN][1000 genomes]
rs9766199	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv5516	chr6:144300321-144345812	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144341600-144345400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:144341800-144347400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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