Variant report

Variant	rs11756126
Chromosome Location	chr6:144375435-144375436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11754802	0.90[JPT][hapmap]
rs11756447	0.83[JPT][hapmap]
rs11757814	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11760032	0.83[ASN][1000 genomes]
rs12529969	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17073300	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17073303	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17073312	0.87[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17073315	0.80[AFR][1000 genomes]
rs2144571	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914895	1.00[YRI][hapmap]
rs6923789	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930286	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6930429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752731	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773278	0.85[ASN][1000 genomes]
rs9496845	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144370200-144375800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:144371200-144376200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:144371400-144375600	Weak transcription	Primary B cells from cord blood	blood
4	chr6:144373600-144375800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:144373800-144376000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:144374400-144376000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:144374600-144375800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:144374600-144376000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:144374600-144376000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:144374600-144376000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:144374600-144376400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:144374800-144375600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:144374800-144376000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:144375000-144376000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr6:144375000-144376200	Weak transcription	Primary T cells from cord blood	blood
16	chr6:144375200-144375600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:144375400-144375600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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