Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:144371189..144375140-chr6:144384339..144387868,3	K562	blood:
2	chr6:144370110..144372137-chr6:144374360..144376515,2	K562	blood:
3	chr6:144373653..144378437-chr6:144382372..144387583,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11751524	1.00[EUR][1000 genomes]
rs11752662	1.00[EUR][1000 genomes]
rs11753175	1.00[EUR][1000 genomes]
rs11753428	1.00[EUR][1000 genomes]
rs11754802	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11755758	1.00[EUR][1000 genomes]
rs11755974	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11756126	0.87[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11756447	0.92[JPT][hapmap]
rs11757814	0.93[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs11758098	1.00[EUR][1000 genomes]
rs11758344	1.00[EUR][1000 genomes]
rs11759466	1.00[EUR][1000 genomes]
rs11760032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529969	0.83[ASN][1000 genomes]
rs12665148	1.00[EUR][1000 genomes]
rs17073300	0.83[ASN][1000 genomes]
rs17073303	0.93[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs17073315	0.95[AFR][1000 genomes]
rs2144571	0.83[ASN][1000 genomes]
rs56735264	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57325163	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58809454	0.87[ASN][1000 genomes]
rs58989946	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6914895	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6923789	0.83[ASN][1000 genomes]
rs6930286	0.93[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs6930429	0.93[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs6941674	0.81[AFR][1000 genomes]
rs7752731	0.93[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9496845	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144370200-144375800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:144371200-144376200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:144371400-144375600	Weak transcription	Primary B cells from cord blood	blood
4	chr6:144373600-144375800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:144373800-144376000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:144374400-144375000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:144374400-144376000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:144374600-144375000	Enhancers	Primary T cells from cord blood	blood
9	chr6:144374600-144375800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:144374600-144376000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr6:144374600-144376000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:144374600-144376000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:144374600-144376400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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