Variant report

Variant	rs11755974
Chromosome Location	chr6:144380459-144380460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11751524	1.00[EUR][1000 genomes]
rs11752662	1.00[EUR][1000 genomes]
rs11753175	1.00[EUR][1000 genomes]
rs11753428	1.00[EUR][1000 genomes]
rs11754802	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755758	1.00[EUR][1000 genomes]
rs11758098	1.00[EUR][1000 genomes]
rs11758344	1.00[EUR][1000 genomes]
rs11759466	1.00[EUR][1000 genomes]
rs11760032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665148	1.00[EUR][1000 genomes]
rs17073312	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56735264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57325163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58809454	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58989946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144375800-144384000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:144375800-144384600	Weak transcription	Gastric	stomach
3	chr6:144376800-144384200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:144377000-144384000	Weak transcription	Primary B cells from cord blood	blood
5	chr6:144377200-144383800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:144377200-144383800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:144377200-144383800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:144377400-144380600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:144377400-144383800	Weak transcription	Thymus	Thymus
10	chr6:144377600-144384000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:144377600-144384200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:144378200-144382400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:144378200-144384000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:144380400-144380600	ZNF genes & repeats	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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