Variant report

Variant	rs11760032
Chromosome Location	chr6:144357937-144357938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf94-3	chr6:144357755-144358118	NONHSAT115375

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11751524	1.00[EUR][1000 genomes]
rs11752662	1.00[EUR][1000 genomes]
rs11753175	1.00[EUR][1000 genomes]
rs11753428	1.00[EUR][1000 genomes]
rs11754802	1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11755758	1.00[EUR][1000 genomes]
rs11755974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11756126	0.93[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs11756447	0.92[JPT][hapmap]
rs11757814	0.93[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs11758098	1.00[EUR][1000 genomes]
rs11758344	1.00[EUR][1000 genomes]
rs11759466	1.00[EUR][1000 genomes]
rs12529969	0.83[ASN][1000 genomes]
rs12665148	1.00[EUR][1000 genomes]
rs17073300	0.83[ASN][1000 genomes]
rs17073303	0.93[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs17073312	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144571	0.83[ASN][1000 genomes]
rs56735264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57325163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58809454	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58989946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6923789	0.83[ASN][1000 genomes]
rs6930286	0.93[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs6930429	0.93[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7752731	0.93[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs9496845	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144355600-144359800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:144356600-144358200	Enhancers	Spleen	Spleen
3	chr6:144356800-144358000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:144356800-144358400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr6:144356800-144358400	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr6:144357000-144358000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:144357000-144358200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
8	chr6:144357000-144358400	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:144357200-144358000	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr6:144357200-144358000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:144357200-144358000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:144357200-144358000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr6:144357200-144358000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:144357200-144358000	Active TSS	Colon Smooth Muscle	Colon
15	chr6:144357200-144358000	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr6:144357200-144358000	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr6:144357200-144358200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:144357200-144358200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:144357200-144358200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:144357200-144358200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:144357200-144358200	Enhancers	Fetal Thymus	thymus
22	chr6:144357200-144358200	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr6:144357200-144358200	Active TSS	Stomach Smooth Muscle	stomach
24	chr6:144357200-144358200	Flanking Active TSS	GM12878-XiMat	blood
25	chr6:144357200-144358200	Flanking Active TSS	NHDF-Ad	bronchial
26	chr6:144357200-144358200	Flanking Active TSS	NHLF	lung
27	chr6:144357200-144358200	Flanking Active TSS	Osteobl	bone
28	chr6:144357200-144358400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:144357200-144358400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:144357400-144358000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:144357400-144358000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:144357400-144358000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:144357400-144358000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr6:144357400-144358000	Active TSS	Aorta	Aorta
35	chr6:144357400-144358000	Active TSS	Brain Anterior Caudate	brain
36	chr6:144357400-144358000	Active TSS	Rectal Smooth Muscle	rectum
37	chr6:144357400-144358000	Active TSS	Right Atrium	heart
38	chr6:144357400-144358000	Flanking Bivalent TSS/Enh	HepG2	liver
39	chr6:144357400-144358000	Flanking Active TSS	HMEC	breast
40	chr6:144357400-144358200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
41	chr6:144357400-144358200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:144357400-144358200	Enhancers	Brain Angular Gyrus	brain
43	chr6:144357400-144358200	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr6:144357400-144358200	Enhancers	Fetal Intestine Small	intestine
45	chr6:144357400-144358200	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr6:144357400-144358200	Flanking Active TSS	Fetal Lung	lung
47	chr6:144357400-144358200	Enhancers	K562	blood
48	chr6:144357600-144358000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:144357600-144358000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:144357600-144358000	Active TSS	Brain Cingulate Gyrus	brain

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