Variant report

Variant	rs56735264
Chromosome Location	chr6:144377185-144377186
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144375075..144378072-chr6:144379942..144382591,2	MCF-7	breast:
2	chr6:144373653..144378437-chr6:144382372..144387583,6	MCF-7	breast:
3	chr6:144375975..144378757-chr6:144385007..144388377,3	K562	blood:
4	chr6:144376991..144380042-chr6:144383907..144387105,4	K562	blood:
5	chr6:144370110..144373027-chr6:144375015..144377542,2	K562	blood:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11751524	1.00[EUR][1000 genomes]
rs11752662	1.00[EUR][1000 genomes]
rs11753175	1.00[EUR][1000 genomes]
rs11753428	1.00[EUR][1000 genomes]
rs11754802	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11755758	1.00[EUR][1000 genomes]
rs11755974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11758098	1.00[EUR][1000 genomes]
rs11758344	1.00[EUR][1000 genomes]
rs11759466	1.00[EUR][1000 genomes]
rs11760032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12665148	1.00[EUR][1000 genomes]
rs17073312	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57325163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58809454	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58989946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144375800-144377200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:144375800-144377200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:144375800-144377400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:144375800-144384000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:144375800-144384600	Weak transcription	Gastric	stomach
6	chr6:144376000-144377200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:144376000-144377200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:144376000-144377200	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr6:144376000-144377200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:144376200-144377200	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr6:144376200-144377200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
12	chr6:144376400-144377200	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr6:144376400-144377200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr6:144376400-144377200	Flanking Active TSS	GM12878-XiMat	blood
15	chr6:144376600-144377200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr6:144376600-144377200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr6:144376800-144377200	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:144376800-144377600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:144376800-144384200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:144377000-144377200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:144377000-144377400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:144377000-144377400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr6:144377000-144377400	Enhancers	Thymus	Thymus
24	chr6:144377000-144377600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr6:144377000-144377600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:144377000-144377600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:144377000-144377600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr6:144377000-144377600	Enhancers	Fetal Thymus	thymus
29	chr6:144377000-144377600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr6:144377000-144384000	Weak transcription	Primary B cells from cord blood	blood

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