Variant report

Variant	rs77752192
Chromosome Location	chr7:26246417-26246418
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr7:26246386-26246572	K562	blood:	n/a	n/a
2	POLR2A	chr7:26246192-26246578	K562	blood:	n/a	n/a
3	POLR2A	chr7:26246392-26248135	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26245433..26248011-chr7:26331906..26333789,2	K562	blood:
2	chr7:26245933..26247865-chr7:26330832..26332898,2	MCF-7	breast:

Variant related genes	Relation type
CBX3	TF binding region
ENSG00000086300	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv887851	chr7:26236235-26248965	Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	140 gene(s)	inside rSNPs	n/a
4	nsv887853	chr7:26236933-26248965	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	140 gene(s)	inside rSNPs	n/a
5	nsv887854	chr7:26238100-26248965	Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	136 gene(s)	inside rSNPs	n/a
6	esv3376986	chr7:26242542-26248102	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
7	esv1821097	chr7:26243108-26303403	Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv3370996	chr7:26245979-26248143	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
9	esv2390496	chr7:26245997-26248123	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
10	esv3401528	chr7:26246007-26248099	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
11	esv3328783	chr7:26246036-26248103	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
12	esv3400312	chr7:26246072-26248062	Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26242400-26249400	Weak transcription	Stomach Mucosa	stomach
2	chr7:26242600-26246600	Weak transcription	Pancreas	Pancrea
3	chr7:26242600-26247200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:26242600-26247200	Weak transcription	Lung	lung
5	chr7:26242600-26249200	Weak transcription	Gastric	stomach
6	chr7:26242600-26249400	Weak transcription	Esophagus	oesophagus
7	chr7:26242800-26254000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:26243600-26246600	Weak transcription	Right Ventricle	heart
9	chr7:26243600-26249400	Weak transcription	Aorta	Aorta
10	chr7:26244200-26247200	Weak transcription	Psoas Muscle	Psoas
11	chr7:26244200-26250000	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr7:26244400-26246600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:26244400-26246600	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:26244400-26246600	Weak transcription	Ovary	ovary
15	chr7:26244400-26246800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:26244400-26247000	Weak transcription	Spleen	Spleen
17	chr7:26244400-26248800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:26244400-26249200	Weak transcription	Brain Substantia Nigra	brain
19	chr7:26244400-26251400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr7:26244400-26271400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:26244600-26246600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:26244800-26254200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr7:26245000-26247000	Genic enhancers	Primary T cells from cord blood	blood
24	chr7:26245000-26248000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
25	chr7:26245000-26248800	Weak transcription	Brain Anterior Caudate	brain
26	chr7:26245200-26246800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr7:26245200-26252800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:26245400-26246800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
29	chr7:26245400-26246800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:26245400-26246800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:26245400-26250600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:26245400-26250800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:26245400-26252200	Strong transcription	Fetal Lung	lung
34	chr7:26245400-26252800	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr7:26245400-26252800	Strong transcription	Primary B cells from peripheral blood	blood
36	chr7:26245400-26252800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr7:26245400-26252800	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr7:26245400-26253000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:26245400-26253000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:26245400-26253200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:26245400-26253200	Strong transcription	HSMM	muscle
42	chr7:26245400-26253600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:26245600-26246600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:26245600-26246800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:26245600-26246800	Genic enhancers	Brain Germinal Matrix	brain
46	chr7:26245600-26246800	Genic enhancers	K562	blood
47	chr7:26245600-26247200	Weak transcription	Small Intestine	intestine
48	chr7:26245600-26247600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
49	chr7:26245600-26247800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr7:26245600-26248000	Genic enhancers	HUVEC	blood vessel

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