Variant report

Variant	rs7776373
Chromosome Location	chr6:80958077-80958078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80956342..80959082-chr6:80970604..80972949,2	K562	blood:
2	chr6:80951610..80958338-chr6:80959333..80963216,7	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7772330	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9688898	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80914600-80980400	Weak transcription	Ovary	ovary
2	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:80922200-80964200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:80924000-80968400	Weak transcription	Gastric	stomach
5	chr6:80924000-80976000	Weak transcription	HSMM	muscle
6	chr6:80927800-80959800	Weak transcription	Aorta	Aorta
7	chr6:80929400-80969200	Weak transcription	Left Ventricle	heart
8	chr6:80939000-80974800	Weak transcription	Primary T cells from cord blood	blood
9	chr6:80939200-80959600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:80940600-80964200	Weak transcription	Liver	Liver
11	chr6:80944000-80960000	Weak transcription	Psoas Muscle	Psoas
12	chr6:80944000-80982800	Weak transcription	Pancreas	Pancrea
13	chr6:80944400-80961600	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:80944600-80977200	Weak transcription	Fetal Stomach	stomach
15	chr6:80951400-80959800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:80952800-80960200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:80954400-80960000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:80956000-80958200	Weak transcription	K562	blood
19	chr6:80956400-80958200	Enhancers	Fetal Heart	heart
20	chr6:80956600-80971000	Weak transcription	Lung	lung
21	chr6:80956800-80958200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:80956800-80964200	Weak transcription	Brain Angular Gyrus	brain
23	chr6:80957400-80959000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:80957600-80960400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:80957600-80964400	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:80957600-80975200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:80957800-80964400	Weak transcription	Brain Substantia Nigra	brain

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