Variant report

Variant	rs7777552
Chromosome Location	chr7:32690094-32690095
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:32528333..32529956-chr7:32688267..32690479,2	K562	blood:
2	chr7:32688789..32691136-chr7:32691275..32693356,2	K562	blood:

Variant related genes	Relation type
ENSG00000106355	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10242306	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11972394	0.83[EUR][1000 genomes]
rs11975528	0.83[EUR][1000 genomes]
rs17161418	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17161473	1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs17161478	1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs17364567	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs3857734	0.83[EUR][1000 genomes]
rs66771705	0.83[EUR][1000 genomes]
rs66999743	0.87[EUR][1000 genomes]
rs67012805	0.80[EUR][1000 genomes]
rs67068823	0.87[EUR][1000 genomes]
rs67223828	0.82[EUR][1000 genomes]
rs67384597	0.80[EUR][1000 genomes]
rs67497452	0.80[EUR][1000 genomes]
rs67644203	0.83[EUR][1000 genomes]
rs67920735	0.80[EUR][1000 genomes]
rs67992039	0.83[EUR][1000 genomes]
rs6961223	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs73103074	0.83[EUR][1000 genomes]
rs73104922	0.87[EUR][1000 genomes]
rs73107033	0.87[EUR][1000 genomes]
rs73107064	0.83[EUR][1000 genomes]
rs73307500	0.87[EUR][1000 genomes]
rs73309516	0.83[EUR][1000 genomes]
rs73309588	0.80[EUR][1000 genomes]
rs7801939	1.00[GIH][hapmap]
rs7803586	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887921	chr7:32249622-32729174	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv887922	chr7:32502105-32694219	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3337088	chr7:32563206-32859668	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv887923	chr7:32573570-32729174	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv887924	chr7:32649189-32743320	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1792641	chr7:32660790-32753500	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv830941	chr7:32686086-32869338	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:32631400-32708600	Weak transcription	Pancreas	Pancrea
2	chr7:32648200-32708000	Weak transcription	Fetal Intestine Small	intestine
3	chr7:32652600-32715800	Weak transcription	Ovary	ovary
4	chr7:32656800-32697600	Weak transcription	HSMM	muscle
5	chr7:32677600-32708000	Weak transcription	HSMMtube	muscle
6	chr7:32688800-32696400	Weak transcription	A549	lung
7	chr7:32689000-32696600	Weak transcription	K562	blood
8	chr7:32689600-32695800	Weak transcription	Brain Hippocampus Middle	brain

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