Variant report

Variant	rs7801939
Chromosome Location	chr7:32841025-32841026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10242306	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1127607	1.00[ASN][1000 genomes]
rs12113174	1.00[ASN][1000 genomes]
rs17161473	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap]
rs17161478	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap]
rs17161520	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17381638	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56734782	1.00[ASN][1000 genomes]
rs57106834	1.00[ASN][1000 genomes]
rs57975266	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59039264	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60966234	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61044748	1.00[ASN][1000 genomes]
rs61429260	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66910911	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67200335	1.00[ASN][1000 genomes]
rs67608094	1.00[ASN][1000 genomes]
rs67708078	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67927386	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953448	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954893	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960268	1.00[ASN][1000 genomes]
rs6961223	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094300	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096212	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096233	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098230	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098242	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098252	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098273	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73103770	1.00[ASN][1000 genomes]
rs7777552	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337088	chr7:32563206-32859668	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv830941	chr7:32686086-32869338	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	esv10331	chr7:32746123-32851515	Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7801939	KIAA0241	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:32841000-32842600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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