Variant report

Variant	rs73098273
Chromosome Location	chr7:32868594-32868595
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10242306	1.00[ASN][1000 genomes]
rs1127607	1.00[ASN][1000 genomes]
rs12113174	1.00[ASN][1000 genomes]
rs17161520	1.00[ASN][1000 genomes]
rs17381638	1.00[ASN][1000 genomes]
rs56734782	1.00[ASN][1000 genomes]
rs57106834	1.00[ASN][1000 genomes]
rs57975266	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59039264	1.00[ASN][1000 genomes]
rs60966234	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61044748	1.00[ASN][1000 genomes]
rs61429260	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66910911	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67200335	1.00[ASN][1000 genomes]
rs67608094	1.00[ASN][1000 genomes]
rs67708078	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67927386	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953448	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954893	1.00[ASN][1000 genomes]
rs6960268	1.00[ASN][1000 genomes]
rs6961223	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094300	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096212	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096233	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098230	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098242	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098252	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73103770	1.00[ASN][1000 genomes]
rs73105656	1.00[ASN][1000 genomes]
rs7801939	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830941	chr7:32686086-32869338	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1028847	chr7:32847661-32921484	Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv981446	chr7:32851640-32902345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:32866000-32868600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:32866000-32874000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:32866200-32874200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:32868200-32869000	Enhancers	A549	lung
5	chr7:32868200-32869600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:32868400-32868600	Enhancers	HUES64 Cell Line	embryonic stem cell

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