Variant report

Variant	rs73098252
Chromosome Location	chr7:32857865-32857866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10242306	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1127607	1.00[ASN][1000 genomes]
rs12113174	1.00[ASN][1000 genomes]
rs17161520	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17381638	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56734782	1.00[ASN][1000 genomes]
rs57106834	1.00[ASN][1000 genomes]
rs57975266	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59039264	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60966234	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61044748	1.00[ASN][1000 genomes]
rs61429260	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66910911	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67200335	1.00[ASN][1000 genomes]
rs67608094	1.00[ASN][1000 genomes]
rs67708078	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67927386	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953448	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954893	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960268	1.00[ASN][1000 genomes]
rs6961223	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094300	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096212	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096233	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098230	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098242	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098273	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73103770	1.00[ASN][1000 genomes]
rs7801939	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337088	chr7:32563206-32859668	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv830941	chr7:32686086-32869338	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1028847	chr7:32847661-32921484	Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv981446	chr7:32851640-32902345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:32852000-32859400	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links