Variant report

Variant	rs6953448
Chromosome Location	chr7:32837917-32837918
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:32835283..32838006-chr7:32928432..32930862,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170852	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10242306	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1127607	1.00[ASN][1000 genomes]
rs12113174	1.00[ASN][1000 genomes]
rs17161520	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17381638	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56734782	1.00[ASN][1000 genomes]
rs57106834	1.00[ASN][1000 genomes]
rs57975266	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59039264	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60966234	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61044748	1.00[ASN][1000 genomes]
rs61429260	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66910911	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67200335	1.00[ASN][1000 genomes]
rs67608094	1.00[ASN][1000 genomes]
rs67708078	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67927386	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954893	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960268	1.00[ASN][1000 genomes]
rs6961223	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094300	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098242	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098252	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098273	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73103770	1.00[ASN][1000 genomes]
rs7801939	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337088	chr7:32563206-32859668	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv830941	chr7:32686086-32869338	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	esv10331	chr7:32746123-32851515	Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6953448	KIAA0241	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:32827800-32840400	Weak transcription	Right Atrium	heart
2	chr7:32834800-32840200	Weak transcription	Aorta	Aorta

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