Variant report

Variant	rs7777655
Chromosome Location	chr7:140339779-140339780
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140338343..140339883-chr7:140370267..140373253,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133597	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs269248	1.00[AMR][1000 genomes]
rs269249	1.00[AMR][1000 genomes]
rs7793009	0.83[AMR][1000 genomes]
rs7798295	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140338200-140339800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
2	chr7:140339000-140339800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:140339000-140339800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr7:140339000-140340000	Flanking Active TSS	NH-A	brain
5	chr7:140339000-140340800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:140339000-140341400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:140339200-140339800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:140339200-140339800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
9	chr7:140339200-140339800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:140339200-140339800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:140339200-140339800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:140339200-140339800	Flanking Active TSS	Brain Anterior Caudate	brain
13	chr7:140339200-140339800	Flanking Active TSS	Brain Germinal Matrix	brain
14	chr7:140339200-140339800	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr7:140339200-140339800	Flanking Active TSS	Fetal Brain Male	brain
16	chr7:140339200-140339800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
17	chr7:140339200-140339800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
18	chr7:140339200-140339800	Bivalent/Poised TSS	Stomach Mucosa	stomach
19	chr7:140339200-140340000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:140339200-140340000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:140339200-140340000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
22	chr7:140339200-140340000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:140339200-140340000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:140339200-140340000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:140339200-140340000	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr7:140339200-140340000	Flanking Active TSS	Fetal Brain Female	brain
27	chr7:140339200-140340000	Active TSS	Right Atrium	heart
28	chr7:140339200-140340200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
29	chr7:140339200-140340200	Flanking Active TSS	Placenta	Placenta
30	chr7:140339200-140340400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:140339200-140341200	Bivalent/Poised TSS	Psoas Muscle	Psoas
32	chr7:140339200-140341200	Active TSS	NHLF	lung
33	chr7:140339200-140341400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
34	chr7:140339200-140341600	Active TSS	Left Ventricle	heart
35	chr7:140339400-140339800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
36	chr7:140339400-140339800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
37	chr7:140339400-140339800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
38	chr7:140339400-140339800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:140339400-140339800	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
40	chr7:140339400-140339800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
41	chr7:140339400-140339800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
42	chr7:140339400-140339800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
43	chr7:140339400-140339800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr7:140339400-140339800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
45	chr7:140339400-140339800	Bivalent Enhancer	HSMM	muscle
46	chr7:140339400-140340000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
47	chr7:140339400-140340000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
48	chr7:140339400-140340000	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
49	chr7:140339400-140340000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:140339400-140340000	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum

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