Variant report

Variant	rs7798295
Chromosome Location	chr7:140338718-140338719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140338343..140339883-chr7:140370267..140373253,2	MCF-7	breast:
2	chr7:140330889..140333777-chr7:140334738..140338747,3	K562	blood:
3	chr7:140323886..140324547-chr7:140338246..140338841,2	MCF-7	breast:
4	chr7:140217530..140218341-chr7:140338101..140338802,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133597	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs269248	0.85[AMR][1000 genomes]
rs269249	0.85[AMR][1000 genomes]
rs7777655	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140326600-140339600	Weak transcription	Esophagus	oesophagus
2	chr7:140334400-140339000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:140335200-140339200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:140335200-140339200	Enhancers	Brain Substantia Nigra	brain
5	chr7:140335200-140339200	Enhancers	Placenta	Placenta
6	chr7:140335200-140339400	Enhancers	Brain Angular Gyrus	brain
7	chr7:140336000-140339600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:140336200-140339600	Weak transcription	Pancreas	Pancrea
9	chr7:140336400-140339200	Enhancers	Brain Hippocampus Middle	brain
10	chr7:140336400-140339400	Weak transcription	Spleen	Spleen
11	chr7:140337000-140339000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:140337000-140339000	Enhancers	Right Atrium	heart
13	chr7:140337000-140339200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:140337200-140339000	Bivalent Enhancer	Fetal Intestine Small	intestine
15	chr7:140337200-140339200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr7:140337200-140339600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:140337200-140339600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:140337400-140338800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr7:140337400-140339000	Enhancers	Colon Smooth Muscle	Colon
20	chr7:140337400-140339200	Enhancers	Brain Cingulate Gyrus	brain
21	chr7:140337400-140339200	Enhancers	Ovary	ovary
22	chr7:140337600-140339000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:140337600-140339200	Enhancers	Brain Anterior Caudate	brain
24	chr7:140337600-140339200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:140337600-140339200	Enhancers	Fetal Brain Female	brain
26	chr7:140337600-140339600	Flanking Active TSS	Fetal Lung	lung
27	chr7:140337800-140339000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:140337800-140339400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:140337800-140339400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:140337800-140339400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr7:140338000-140338800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
32	chr7:140338000-140338800	Enhancers	Gastric	stomach
33	chr7:140338000-140339000	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr7:140338000-140339000	Enhancers	A549	lung
35	chr7:140338000-140339200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:140338000-140339200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr7:140338000-140339400	Enhancers	NHEK	skin
38	chr7:140338200-140338800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:140338200-140338800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
40	chr7:140338200-140338800	Flanking Active TSS	NHLF	lung
41	chr7:140338200-140339000	Flanking Active TSS	Fetal Stomach	stomach
42	chr7:140338200-140339200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr7:140338200-140339200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr7:140338200-140339200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr7:140338200-140339200	Flanking Active TSS	Fetal Muscle Leg	muscle
46	chr7:140338200-140339400	Weak transcription	Liver	Liver
47	chr7:140338200-140339400	Flanking Active TSS	Fetal Muscle Trunk	muscle
48	chr7:140338200-140339600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:140338200-140339800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr7:140338400-140338800	Flanking Active TSS	Adipose Nuclei	Adipose

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